Hg_chrom7_TN10mRNA_14842
Organism: Heterodera glycines Gene Locus: chr7:8843866-8845420 Feature type: polypeptideProtein Sequence
Length: 374
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 1.181 | 0.778 | 0.645 | 1.693 | 1.371 | 0.828 | 1.07 | 0.951 | 1.265 | 0.932 | 1.416 | 0.966 | 0.514 | 1.037 | 1.108 | 0.833 | 1.013 | 0.617 | 0.393 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14005
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.325
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
1-21
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.095
|
0.977
|
0.009
|
0.206
|
0.060
|
0.035
|
0.084
|
0.014
|
0.042
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004662
|
2.000
|
1.000
|
Hsc_gene_12447.t1
|
Hsc_gene_12447.t1;Hsc_gene_12450.t1;Hsc_gene_12450.t2;Hsc_gene_12450.t3
|
— |
Q20819.1 Elongation factor Ts, mitochondrial [Caenorhabditis elegans]
|
KAF7637934.1 Elongation factor Ts, mitochondrial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003746|GO:0005515|GO:0006414
|
GO:0005575_0.906|GO:0110165_0.896|GO:0005622_0.793|GO:0005737_0.732|GO:0016020_0.715|GO:0043226_0.599|GO:0003674_0.586|GO:0043229_0.579|GO:0043227_0.563|GO:0005488_0.552|GO:0043231_0.531
|
IPR001816+39-367_40-374+|IPR009060+40-94+|IPR014039+115-362+|IPR018101+118-128+|IPR036402+99-361_100-216_219-374+
|
— |
PF00889+115-362+Elongation_factor_TS
|
— |
PTHR11741+39-367+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
247-374
|
1.000
|
1-246
|
1aip_H
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.515
|
41266.530
|
5.112
|
-8.000
|
27.807
|
7.754
|
51.070
|
48.930
|
13.369
|
14.439
|
49.465
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
1120.611
|
732.501
|
930.974
|
894.330
|
1031.057
|
817.644
|
1006.820
|
1031.646
|
771.437
|
1907.233
|
1420.463
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.151
|
— |
0.173
|
-0.319
|
0.311
|
— | — |
-1.401
|
— | — | — | — |
No JSON data available for plots.