Hg_chrom7_TN10mRNA_14844
Organism: Heterodera glycines Gene Locus: chr7:8848047-8849874 Feature type: polypeptideProtein Sequence
Length: 395
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.942 | 1.413 | 0.875 | 0.786 | 1.435 | 1.363 | 0.723 | 2.152 | 0.731 | 1.368 | 0.882 | 1.489 | 1.195 | 0.682 | 0.93 | 1.085 | 0.789 | 0.997 | 0.195 | 0.298 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14007
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
44-67
|
0.987
|
34-75
|
0.966
|
— | — |
0.000
|
— | — |
0.464
|
0.289
|
0.025
|
0.555
|
0.119
|
0.090
|
0.134
|
0.028
|
0.105
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004662
|
2.000
|
1.000
|
Hsc_gene_12447.t1
|
Hsc_gene_12447.t1;Hsc_gene_12450.t1;Hsc_gene_12450.t2;Hsc_gene_12450.t3;Hsc_gene_12452.t1
|
— |
Q20819.1 Elongation factor Ts, mitochondrial [Caenorhabditis elegans]
|
KAH7716933.1 Elongation factor TS family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003746|GO:0006414
|
GO:0005575_0.893|GO:0110165_0.885|GO:0005622_0.827|GO:0016020_0.799|GO:0043226_0.772|GO:0043229_0.760|GO:0043227_0.746|GO:0005737_0.732|GO:0043231_0.717|GO:0008150_0.606|GO:0005739_0.555|GO:0009987_0.548|GO:0003674_0.523|GO:0050789_0.521|GO:0065007_0.521
|
IPR001163+8-77_9-76+|IPR001816+178-387+|IPR010920+8-86+|IPR014039+186-383+|IPR036402+240-395_246-383+|IPR047575+5-81+
|
SM00651+8-77+
|
PF00889+186-383+Elongation_factor_TS|PF01423+9-76+LSM_domain
|
— |
PTHR11741+178-387+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
268-395
|
1.000
|
1-267
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
43807.370
|
6.158
|
-3.500
|
28.101
|
9.873
|
51.899
|
48.101
|
14.684
|
13.418
|
49.873
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
blue
|
593.499
|
274.658
|
288.054
|
336.091
|
406.764
|
311.235
|
518.175
|
521.811
|
500.205
|
1225.109
|
914.436
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.154
|
0.332
|
0.242
|
-0.371
|
0.748
|
0.640
|
— | — | — | — | — | — |
No JSON data available for plots.