Hg_chrom7_TN10mRNA_14845
Organism: Heterodera glycines Gene Locus: chr7:8849899-8852740 Feature type: polypeptideProtein Sequence
Length: 517
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.945 | 0.945 | 1.301 | 0.6 | 1.161 | 1.24 | 0.875 | 1.451 | 1.289 | 1.307 | 0.586 | 0.683 | 1.451 | 0.484 | 1.145 | 0.857 | 0.793 | 1.377 | 1.488 | 0.341 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14008
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.558
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.411
|
0.467
|
0.132
|
0.723
|
0.270
|
0.178
|
0.128
|
0.159
|
0.111
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004663
|
1.000
|
2.000
|
Hsc_gene_12448.t1;Hsc_gene_12451.t1
|
Hsc_gene_12451.t1
|
— |
Q3TMV7.1 Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 [Mus musculus]
|
KAI3420984.1 Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0005575_0.815|GO:0110165_0.806|GO:0005622_0.737|GO:0016020_0.732|GO:0005737_0.715|GO:0043226_0.672|GO:0043229_0.656|GO:0008150_0.649|GO:0043227_0.635|GO:0043231_0.626|GO:0009987_0.591|GO:0005634_0.515
|
IPR016156+427-507+|IPR023753+9-205_320-404+|IPR036188+2-134_9-411_131-242_135-264_312-417+|IPR050260+9-517+
|
— |
PF07992+9-205_320-404+Pyridine_nucleotide-disulphide_oxidoreductase
|
— |
PTHR43429+9-517+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-517
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
57559.130
|
4.844
|
-16.500
|
26.499
|
11.219
|
46.228
|
53.772
|
12.379
|
14.120
|
50.870
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1515.332
|
1643.718
|
1797.364
|
1641.226
|
1549.343
|
1322.347
|
1571.007
|
1851.117
|
827.617
|
1742.819
|
1350.590
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.101
|
-0.139
|
— |
-0.115
|
-0.214
|
0.258
|
0.380
|
— | — | — | — | — | — |
No JSON data available for plots.