Hg_chrom7_TN10mRNA_14849
Organism: Heterodera glycines Gene Locus: chr7:8861483-8874099 Feature type: polypeptideProtein Sequence
Length: 1,589
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.981 | 0.966 | 1.041 | 0.89 | 0.934 | 1.291 | 0.787 | 1.636 | 0.867 | 1.386 | 0.381 | 1.814 | 1.259 | 1.271 | 1.772 | 0.953 | 0.763 | 0.734 | 0.823 | 0.518 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14012
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.665
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
RRVQDVDLFLLGLAERPRR,RKAIELGLERMLERRKRET
|
— | — | — | — |
1-23
|
0.926
|
0.906
|
0.000
|
0.000
|
0.195
|
0.148
|
0.245
|
0.265
|
0.073
|
0.079
|
0.113
|
0.079
|
0.533
|
0.839
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002450
|
2.000
|
2.000
|
Hsc_gene_12419.t1;Hsc_gene_12419.t2
|
Hsc_gene_12419.t1;Hsc_gene_12419.t2
|
— |
Q7QH73.3 Chorion peroxidase [Anopheles gambiae]
|
KAI1706920.1 heme peroxidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004601|GO:0006979|GO:0020037
|
GO:0008150_0.883|GO:0009987_0.836|GO:0005575_0.793|GO:0110165_0.790|GO:0003674_0.713|GO:0050896_0.621|GO:0003824_0.557|GO:0051716_0.552|GO:0008152_0.533|GO:0044237_0.504
|
IPR010255+153-768_934-1511+|IPR019791+150-770_159-739_931-1513_940-1485_964-975_1011-1026_1156-1174_1174-1194_1199-1225_1259-1269_1387-1407_1461-1475+|IPR037120+141-771_925-1514+|IPR050702+784-1511+
|
— |
PF03098+159-739_940-1485+Animal_haem_peroxidase
|
G3DSA:1.10.640.10:FF:000003+143-769+chorion_peroxidase|G3DSA:1.10.640.10:FF:000006+926-1513+Double_oxidase:_two_peroxidase_domains
|
PTHR11475+784-1511+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
836-898
|
2.000
|
1-835;899-1589
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.745
|
178082.640
|
7.418
|
24.000
|
25.802
|
10.636
|
46.318
|
53.682
|
14.475
|
11.328
|
50.283
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
148.323
|
45.294
|
76.535
|
64.053
|
70.323
|
99.265
|
66.170
|
90.983
|
5.848
|
452.295
|
260.961
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.524
|
0.362
|
— | — |
0.513
|
-0.579
|
— | — | — | — | — | — | — |