Hg_chrom7_TN10mRNA_14850
Organism: Heterodera glycines Gene Locus: chr7:8871401-8879074 Feature type: polypeptideProtein Sequence
Length: 215
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.865 | 0.865 | 1.099 | 0.481 | 0.698 | 1.789 | 0.498 | 1.163 | 0.93 | 1.76 | 0.705 | 1.915 | 0.775 | 0.984 | 2.088 | 0.997 | 0.534 | 0.987 | 1.073 | 0.684 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14013
|
— |
Hg_chrom7_TN10gene_14013
|
1.667
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
11-31
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.077
|
0.930
|
0.016
|
0.100
|
0.035
|
0.084
|
0.084
|
0.014
|
0.050
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004616
|
2.000
|
1.000
|
Hsc_gene_12484.t1
|
Hsc_gene_12484.t1
|
— |
P20004.4 Aconitate hydratase, mitochondrial [Bos taurus]
|
KAI3413931.1 aconitate hydratase [Globodera pallida]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.775|GO:0110165_0.771|GO:0008150_0.649|GO:0016020_0.621|GO:0005622_0.613|GO:0043226_0.568|GO:0043229_0.561|GO:0043227_0.541|GO:0009987_0.539|GO:0005737_0.531|GO:0003674_0.523|GO:0043231_0.520
|
IPR015931+24-123+|IPR036008+28-113+|IPR050926+12-113+
|
— | — | — |
PTHR43160+12-113+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-215
|
1c97_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.708
|
24707.590
|
10.359
|
12.500
|
27.442
|
8.837
|
48.372
|
51.628
|
17.209
|
10.233
|
44.651
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
47.165
|
48.533
|
108.510
|
87.454
|
78.281
|
86.615
|
36.485
|
104.380
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.930
|
0.713
|
— | — | — |
-1.240
|
— |
-1.378
|
— |
7.307
|
5.683
|
— | — |
No JSON data available for plots.