SCN Proteipedia

Hg_chrom7_TN10mRNA_14853

Organism: Heterodera glycines Gene Locus: chr7:8880450-8883726 Feature type: polypeptide

Protein Sequence

Length: 318

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.731	0.878	0.515	0.976	0.681	0.806	1.348	0.629	1.537	1.785	0.286	2.035	1.747	0.786	0.898	0.988	0.67	0.905	1.451	1.572	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_14016	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	0.971

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	lysosome_vacuole	—	—	—	—	—	—	—	—	0.000	—	—	0.055	0.254	0.047	0.074	0.454	0.720	0.538	0.090	0.398	0.058

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004658	2.000	1.000	Hsc_gene_12420.t1	Hsc_gene_12420.t1	—	Q95XZ6.2 Lysosomal amino acid transporter 1 [Caenorhabditis elegans]	KAH7724691.1 PQ loop repeat family protein [Aphelenchus avenae]	No	-0.050

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.948\|GO:0005575_0.901\|GO:0110165_0.899\|GO:0009987_0.894\|GO:0003674_0.864\|GO:0016020_0.864\|GO:0006810_0.840\|GO:0051179_0.840\|GO:0051234_0.840\|GO:0055085_0.801\|GO:0005622_0.774\|GO:0005737_0.774\|GO:0005215_0.748\|GO:0022857_0.748\|GO:0043226_0.732\|GO:0005773_0.718\|GO:0043227_0.718\|GO:0043229_0.718\|GO:0043231_0.718\|GO:0006865_0.689\|GO:0003333_0.687\|GO:0015802_0.670\|GO:1990822_0.670\|GO:0015171_0.661\|GO:0071705_0.659\|GO:0031090_0.657\|GO:0015174_0.650\|GO:0015711_0.627\|GO:0015849_0.616\|GO:0046942_0.616\|GO:1903825_0.615\|GO:1905039_0.614\|GO:0015695_0.605\|GO:0098588_0.602\|GO:0015807_0.601\|GO:1902475_0.601\|GO:0008514_0.596\|GO:0005342_0.590\|GO:0046943_0.590\|GO:0015101_0.581\|GO:0015179_0.581\|GO:0000323_0.573\|GO:0005774_0.563\|GO:0098852_0.556	IPR006603+41-98_53-84_200-257_213-244+\|IPR051415+17-287+	SM00679+53-84_213-244+	PF04193+41-98_200-257+PQ_loop_repeat	G3DSA:1.20.1280.290:FF:000009+40-130+PQ_loop_repeat_family_protein	PTHR16201+17-287+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-318	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.776	35187.040	6.462	0.000	14.465	14.780	32.390	67.610	7.547	6.918	48.113

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	brown	334.214	510.803	442.816	380.038	373.367	496.901	711.162	656.331	123.498	30.280	70.231

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.436	-0.564	—	—	0.427	0.527	—	—	—	—	—	—	—

No JSON data available for plots.

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