Hg_chrom7_TN10mRNA_14861
Organism: Heterodera glycines Gene Locus: chr7:8905484-8916966 Feature type: polypeptideProtein Sequence
Length: 1,959
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.181 | 0.985 | 0.798 | 0.211 | 1.421 | 1.27 | 1.215 | 0.893 | 0.794 | 0.669 | 0.874 | 1.261 | 0.638 | 1.276 | 1.49 | 1.123 | 0.962 | 0.665 | 0.314 | 1.156 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14024
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKKK,KRPR,RRRK,RRRR,PPTKRRI,GQKREGGRRKKT,KRKTSLKRQETTEKREKE,RKMSQREFPVVDSKKRQG,KKSAIENKQDLVRIRREIR
|
— | — |
24-46
|
0.998
|
— | — |
0.020
|
— | — |
0.364
|
0.144
|
0.036
|
0.682
|
0.120
|
0.119
|
0.085
|
0.083
|
0.487
|
0.078
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004664
|
1.000
|
2.000
|
Hsc_gene_12456.t1;Hsc_gene_12456.t2
|
Hsc_gene_12456.t2
|
— |
O60285.1 NUAK family SNF1-like kinase 1 [Homo sapiens]
|
KAI3420975.1 Protein kinase domain-containing protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.960|GO:0005575_0.931|GO:0110165_0.930|GO:0009987_0.906|GO:0003674_0.861|GO:0065007_0.853|GO:0005622_0.845|GO:0050789_0.840|GO:0003824_0.835|GO:0140096_0.835|GO:0050794_0.823|GO:0016740_0.806|GO:0016772_0.795|GO:0016301_0.792|GO:0016773_0.792|GO:0005488_0.786|GO:0004672_0.782|GO:0050896_0.754|GO:0004674_0.737|GO:0008152_0.697|GO:0051716_0.696|GO:0044237_0.692|GO:0016020_0.691|GO:0044238_0.687|GO:0043226_0.680|GO:0005737_0.654|GO:0043170_0.639|GO:0007154_0.626|GO:0043229_0.622|GO:0019538_0.617|GO:0023052_0.617|GO:0006793_0.611|GO:0006796_0.607|GO:0007165_0.602|GO:0032501_0.595|GO:0016043_0.572|GO:0071840_0.572|GO:0071944_0.571|GO:0005515_0.564|GO:0036211_0.544|GO:0043412_0.544|GO:0048518_0.533|GO:0016310_0.528|GO:0048522_0.519|GO:0032502_0.517|GO:0048856_0.517|GO:0006468_0.511|GO:0019222_0.504
|
IPR000719+101-353_102-353+|IPR008271+220-232+|IPR011009+99-354+|IPR017441+107-134+
|
SM00220+101-353+
|
PF00069+102-353+Protein_kinase_domain
|
G3DSA:1.10.510.10:FF:000389+92-409+Uncharacterized_protein,_isoform_E|G3DSA:3.30.200.20:FF:000042+93-184+Aurora_kinase_A
|
PTHR24346+96-578+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
399-1327;1382-1878;1919-1959
|
3.000
|
1-398;1328-1381;1879-1918
|
3iec_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.878
|
213060.990
|
7.966
|
20.500
|
27.769
|
8.423
|
50.689
|
49.311
|
14.855
|
12.915
|
54.364
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3742.405
|
4133.328
|
6555.820
|
3486.963
|
1042.060
|
2279.360
|
445.268
|
5338.142
|
1132.370
|
6793.394
|
4367.241
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.437
|
-0.383
|
-0.803
|
-1.774
|
1.144
|
-2.346
|
1.126
|
-3.442
|
-2.684
|
1.791
|
— | — | — |
No JSON data available for plots.