SCN Proteipedia

Hg_chrom7_TN10mRNA_14869

Organism: Heterodera glycines Gene Locus: chr7:8959604-8966486 Feature type: polypeptide

Protein Sequence

Length: 506

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.758	1.149	0.826	1.295	1.054	1.824	0.729	1.186	1.186	0.908	0.719	2.906	1.263	0.912	1.412	0.875	0.81	0.898	0.456	0.814	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_14032	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.893	0.080	0.018	0.388	0.029	0.036	0.027	0.003	0.051	0.015

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011703	1.000	1.000	Hsc_gene_10430.t1	Hsc_gene_10430.t1	—	Q21878.4 Nuclear hormone receptor family member nhr-1 [Caenorhabditis elegans]	KAI3414110.1 Ligand-binding domain of nuclear hormone receptor [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0000978\|GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.949\|GO:0065007_0.827\|GO:0050789_0.821\|GO:0009987_0.766\|GO:0050794_0.717\|GO:0005575_0.711\|GO:0110165_0.711\|GO:0003674_0.707\|GO:0008152_0.694\|GO:0044237_0.690\|GO:0043170_0.671\|GO:0009058_0.662\|GO:0009059_0.661\|GO:0044249_0.661\|GO:0005622_0.660\|GO:0019222_0.654\|GO:0031323_0.654\|GO:0060255_0.649\|GO:0044238_0.643\|GO:0010467_0.635\|GO:0009889_0.632\|GO:0010556_0.632\|GO:0031326_0.632\|GO:0005488_0.618\|GO:0043226_0.617\|GO:0080090_0.606\|GO:0006139_0.596\|GO:0010468_0.595\|GO:0043229_0.592\|GO:0034654_0.578\|GO:0016070_0.564\|GO:0090304_0.564\|GO:0032774_0.561\|GO:0141187_0.561\|GO:0019219_0.560\|GO:0051252_0.543\|GO:0006351_0.530\|GO:2001141_0.527\|GO:0006355_0.519\|GO:0050896_0.509\|GO:0097159_0.507	IPR000536+275-503_292-487_307-474+\|IPR001628+125-196_125-200_127-194_128-144_128-154_144-159_177-185_185-193+\|IPR001723+189-199_308-329_329-345_401-416_462-479+\|IPR013088+118-222+\|IPR035500+234-504_278-500+\|IPR049636+128-203+\|IPR050274+118-501+	SM00399+125-196+\|SM00430+307-474+	PF00104+292-487+Ligand-binding_domain_of_nuclear_hormone_receptor\|PF00105+127-194+Zinc_finger,_C4_type_(two_domains)	G3DSA:3.30.50.10:FF:000030+120-224+Nuclear_Hormone_Receptor_family	PTHR24083+118-501+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-124	1.000	125-506	3cbb_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.734	57466.860	7.879	10.000	24.901	10.277	48.024	51.976	14.032	10.870	47.628

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	greenyellow	984.789	2775.013	1547.458	476.573	600.394	616.957	1332.113	590.689	426.997	1011.005	760.716

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.073	-2.679	-1.589	0.301	—	1.121	—	1.315	—	—	—	—	—

No JSON data available for plots.

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