Hg_chrom7_TN10mRNA_14876
Organism: Heterodera glycines Gene Locus: chr7:8991539-8998122 Feature type: polypeptideProtein Sequence
Length: 781
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.012 | 1.489 | 1.001 | 1.148 | 1.387 | 1.674 | 0.564 | 1.152 | 1.024 | 1.436 | 0.97 | 2.26 | 0.889 | 0.566 | 1.15 | 0.658 | 0.945 | 0.582 | 0.985 | 0.414 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14039
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.361
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKKRGSKCRDQNTKRRSKD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.412
|
0.183
|
0.007
|
0.710
|
0.064
|
0.143
|
0.164
|
0.073
|
0.429
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004666
|
1.000
|
2.000
|
Hsc_gene_10438.t1;Hsc_gene_10438.t2
|
— | — | — |
KAI3414105.1 Tetratricopeptide repeat protein 28 [Globodera pallida]
|
HED10363
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR011990+6-362_24-209_149-330_489-575+|IPR019734+22-55_145-178_179-212_226-259_262-295_302-335_505-538_642-675+
|
SM00028+22-55_145-178_179-212_226-259_262-295_302-335_505-538_642-675+
|
PF13432+149-211+Tetratricopeptide_repeat
|
— |
PTHR12558+28-207+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
680-781
|
1.000
|
1-679
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.558
|
88605.010
|
6.067
|
-5.000
|
28.169
|
8.195
|
51.472
|
48.528
|
14.341
|
13.828
|
45.839
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
130.403
|
145.049
|
285.357
|
269.990
|
231.480
|
80.937
|
58.062
|
270.652
|
5.529
|
63.295
|
38.538
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.748
|
0.759
|
— |
-0.254
|
-1.501
|
-0.472
|
1.630
|
-2.078
|
— |
5.860
|
3.842
|
— | — |
No JSON data available for plots.