SCN Proteipedia

Hg_chrom7_TN10mRNA_14880

Organism: Heterodera glycines Gene Locus: chr7:9023826-9024410 Feature type: polypeptide

Protein Sequence

Length: 62

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.75	2.626	0.587	0.0	0.538	0.414	0.384	4.032	0.358	0.436	3.177	2.846	0.896	0.62	1.975	1.152	0.529	0.489	0.0	0.474	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_14043	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RKDHRNGIHKPKKERY,KDHRNGIHKPKKERYMSMKGVDPKFLRNLRFAKKHNKRNVK	—	—	—	—	—	—	0.000	—	—	0.530	0.079	0.065	0.583	0.350	0.054	0.137	0.001	0.039	0.048

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	—	—	Q8HXB8.3 Large ribosomal subunit protein eL29 [Macaca fascicularis]	ABR87297.1 large subunit ribosomal protein 29 [Pristionchus pacificus];ABR87298.1 large subunit ribosomal protein 29 [Pristionchus maupasi];ABR87299.1 large subunit ribosomal protein 29 [Pristionchus lheritieri];ABR87300.1 large subunit ribosomal protein 29 [Pristionchus entomophagus];ABR87301.1 large subunit ribosomal protein 29 [Pristionchus uniformis];ABR87302.1 large subunit ribosomal protein 29 [Pristionchus sp. 3 CZ3975];ABR87303.1 large subunit ribosomal protein 29 [Pristionchus sp. 4 RS5050];ABR87304.1 large subunit ribosomal protein 29 [Pristionchus aerivorus];ABR87306.1 large subunit ribosomal protein 29 [Pristionchus marianneae];ABR87307.1 large subunit ribosomal protein 29 [Pristionchus pauli];ABR87308.1 large subunit ribosomal protein 29 [Pristionchus pseudaerivorus];ABR87309.1 large subunit ribosomal protein 29 [Pristionchus sp. 10 RS5133];ABR87311.1 large subunit ribosomal protein 29 [Pristionchus americanus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003735\|GO:0005840\|GO:0006412	GO:0005575_0.922\|GO:0110165_0.922\|GO:0005622_0.832\|GO:0043226_0.806\|GO:0043229_0.806\|GO:0005737_0.707\|GO:0043228_0.694\|GO:0043232_0.694\|GO:0016020_0.589\|GO:0032991_0.563\|GO:0005840_0.560\|GO:0003674_0.536\|GO:0005829_0.516\|GO:0008150_0.501	IPR002673+1-60_3-42+	—	PF01779+3-42+Ribosomal_L29e_protein_family	—	PTHR12884+1-60+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	full	1-62	0.000	—	7oyb_b1	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.970	7341.480	11.846	17.500	45.161	12.903	69.355	30.645	38.710	6.452	41.935

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	sienna3	6539.773	1759.151	2895.050	6908.696	7713.557	7094.803	3924.739	3191.635	15297.626	4580.427	9173.513

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.489	1.836	1.364	0.127	—	-0.844	-1.255	0.441	1.637	—	—	—	—

No JSON data available for plots.

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