Hg_chrom7_TN10mRNA_14881
Organism: Heterodera glycines Gene Locus: chr7:9024508-9025067 Feature type: polypeptideProtein Sequence
Length: 111
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.524 | 0.21 | 0.819 | 0.311 | 1.502 | 0.924 | 1.287 | 0.901 | 1.802 | 0.974 | 1.229 | 2.12 | 1.752 | 1.04 | 1.287 | 0.644 | 0.591 | 1.092 | 0.0 | 1.06 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14044
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.068
|
0.962
|
0.006
|
0.095
|
0.028
|
0.038
|
0.041
|
0.004
|
0.030
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011706
|
1.000
|
1.000
|
Hsc_gene_10441.t1
|
Hsc_gene_10441.t1
|
— |
Q5DC69.2 10 kDa heat shock protein, mitochondrial [Schistosoma japonicum]
|
KAI3414099.1 10 kda heat shock protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0006457|GO:0044183
|
GO:0005575_0.855|GO:0110165_0.839|GO:0005622_0.786|GO:0005737_0.764|GO:0016020_0.697|GO:0043226_0.632|GO:0043229_0.624|GO:0008150_0.591|GO:0043227_0.573|GO:0043231_0.573|GO:0003674_0.572|GO:0005488_0.524
|
IPR011032+18-110+|IPR020818+13-110_18-110_18-111_19-34_19-109_41-62_76-88_97-110+|IPR037124+13-111+
|
SM00883+18-110+
|
PF00166+19-109+Chaperonin_10_Kd_subunit
|
G3DSA:2.30.33.40:FF:000002+13-111+10_kDa_chaperonin,_mitochondrial
|
PTHR10772+13-110+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-111
|
8g7n_M
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.731
|
12522.550
|
8.016
|
2.000
|
29.730
|
11.712
|
42.342
|
57.658
|
16.216
|
13.514
|
42.342
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightcyan
|
4525.802
|
1437.780
|
2267.073
|
8863.915
|
8810.066
|
4616.749
|
4683.436
|
1844.362
|
2687.095
|
5588.797
|
4345.210
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.427
|
2.487
|
2.076
|
— |
-0.917
|
— |
-1.425
|
1.487
|
— | — | — | — | — |
No JSON data available for plots.