Hg_chrom7_TN10mRNA_14883
Organism: Heterodera glycines Gene Locus: chr7:9028518-9030288 Feature type: polypeptideProtein Sequence
Length: 199
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.818 | 0.467 | 0.731 | 0.52 | 0.586 | 1.546 | 0.479 | 2.764 | 0.447 | 1.154 | 0.381 | 1.478 | 2.094 | 0.966 | 1.846 | 1.077 | 1.318 | 1.294 | 0.773 | 1.182 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14046
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.504
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
25-49
|
0.987
|
9-31
|
1.000
|
— | — |
0.000
|
— | — |
0.065
|
0.924
|
0.003
|
0.095
|
0.016
|
0.048
|
0.033
|
0.014
|
0.079
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011708
|
1.000
|
1.000
|
Hsc_gene_10443.t2
|
Hsc_gene_10443.t1;Hsc_gene_10443.t2
|
— |
Q6DFA6.1 Coenzyme Q-binding protein COQ10 homolog A, mitochondrial [Xenopus laevis]
|
KAI1708900.1 polyketide cyclase / dehydrase and lipid transport domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0045333|GO:0048039
|
GO:0005575_0.684|GO:0110165_0.677|GO:0005622_0.605|GO:0016020_0.603|GO:0043226_0.563|GO:0043229_0.554|GO:0005737_0.551|GO:0043227_0.539|GO:0043231_0.534
|
IPR005031+39-171+|IPR023393+31-180+|IPR044996+29-182_33-175+
|
— |
PF03364+39-171+Polyketide_cyclase_/_dehydrase_and_lipid_transport
|
— |
PTHR12901+29-182+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-199
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
23056.320
|
9.970
|
13.500
|
24.623
|
18.090
|
48.241
|
51.759
|
17.085
|
7.538
|
47.739
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
277.387
|
430.517
|
264.679
|
359.260
|
424.123
|
276.094
|
483.573
|
232.468
|
125.141
|
193.195
|
164.029
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.932
|
-0.398
|
0.550
|
0.207
|
-0.605
|
0.818
|
-0.352
|
1.198
|
— | — | — | — | — |
No JSON data available for plots.