Hg_chrom7_TN10mRNA_14884
Organism: Heterodera glycines Gene Locus: chr7:9030393-9032994 Feature type: polypeptideProtein Sequence
Length: 160
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 2.398 | 0.872 | 0.568 | 0.0 | 1.667 | 1.442 | 0.521 | 0.312 | 0.694 | 0.845 | 0.852 | 0.735 | 0.521 | 0.12 | 2.296 | 1.161 | 1.025 | 0.852 | 0.481 | 0.368 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14047
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.695
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKYGHMFTANDRKKGG,RKKGGTLYLQAKVFRAKER
|
12-73
|
0.902
|
— | — | — | — |
0.000
|
— | — |
0.146
|
0.865
|
0.266
|
0.133
|
0.101
|
0.058
|
0.227
|
0.036
|
0.058
|
0.226
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004667
|
2.000
|
1.000
|
Hsc_gene_10445.t1
|
Hsc_gene_10444.t1;Hsc_gene_10445.t1
|
— |
O62250.1 Mitochondrial import inner membrane translocase subunit tim-16 [Caenorhabditis elegans]
|
KAI1722641.1 pam16 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.530
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005744|GO:0030150
|
GO:0008150_0.805|GO:0005575_0.777|GO:0110165_0.772|GO:0005622_0.716|GO:0016020_0.697|GO:0043226_0.675|GO:0043229_0.658|GO:0005737_0.640|GO:0043227_0.601|GO:0043231_0.589|GO:0009987_0.580
|
IPR005341+1-156+|IPR036869+85-146+
|
— |
PF03656+60-156+Pam16
|
G3DSA:1.10.287.110:FF:000006+85-146+Import_inner_membrane_translocase_subunit_TIM16
|
PTHR12388+1-156+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-78;140-160
|
1.000
|
79-139
|
2guz_P
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.661
|
17390.400
|
10.564
|
6.500
|
30.625
|
4.375
|
54.375
|
45.625
|
17.500
|
13.125
|
52.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkgreen
|
937.108
|
171.822
|
310.358
|
404.418
|
428.877
|
293.257
|
318.352
|
138.368
|
3805.190
|
471.409
|
1900.172
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.624
|
1.098
|
0.491
|
— |
-0.534
|
— |
-1.189
|
1.346
|
2.914
|
-3.074
|
— | — | — |
No JSON data available for plots.