Hg_chrom7_TN10mRNA_14889
Organism: Heterodera glycines Gene Locus: chr7:9061764-9063279 Feature type: polypeptideProtein Sequence
Length: 250
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.465 | 1.395 | 0.8 | 1.103 | 1.2 | 1.436 | 0.429 | 0.8 | 1.689 | 1.297 | 0.485 | 2.588 | 1.333 | 1.308 | 1.388 | 0.571 | 0.852 | 0.97 | 1.846 | 0.941 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14051
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.665
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KPRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.409
|
0.365
|
0.021
|
0.557
|
0.185
|
0.169
|
0.108
|
0.075
|
0.162
|
0.165
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011711
|
1.000
|
1.000
|
Hsc_gene_10451.t1
|
— | — | — |
KAI3407418.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.882|GO:0110165_0.868|GO:0005622_0.783|GO:0005737_0.775|GO:0043226_0.723|GO:0043229_0.704|GO:0043228_0.579|GO:0043232_0.579|GO:0099080_0.562|GO:0000932_0.540|GO:0035770_0.540|GO:0036464_0.540|GO:0003674_0.537|GO:0016020_0.519
|
IPR011705+2-99+
|
— |
PF07707+2-99+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+5-116+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-250
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.515
|
29312.000
|
5.718
|
-2.000
|
23.200
|
12.000
|
44.000
|
56.000
|
11.600
|
11.600
|
43.600
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
salmon
|
34.041
|
2.298
|
6.195
|
10.591
|
10.158
|
7.359
|
4.881
|
2.225
|
1.028
|
131.768
|
75.736
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.067
|
0.883
|
— | — | — |
-1.837
|
— |
-6.818
|
— | — | — | — |
No JSON data available for plots.