Hg_chrom7_TN10mRNA_14892
Organism: Heterodera glycines Gene Locus: chr7:9092927-9098028 Feature type: polypeptideProtein Sequence
Length: 528
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.859 | 1.013 | 1.102 | 0.522 | 0.915 | 0.874 | 0.834 | 1.42 | 0.968 | 1.229 | 0.717 | 1.894 | 1.789 | 1.275 | 1.198 | 0.866 | 0.807 | 0.603 | 2.185 | 1.114 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14054
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.673
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KRWIEQAHERHRQQKRMLR
|
— | — | — | — |
1-16
|
0.973
|
1.000
|
0.000
|
0.000
|
0.165
|
0.248
|
0.049
|
0.222
|
0.302
|
0.228
|
0.151
|
0.122
|
0.079
|
0.754
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011713
|
1.000
|
1.000
|
Hsc_gene_10460.t1
|
Hsc_gene_10459.t1;Hsc_gene_10460.t1
|
— |
P34676.1 Prolyl carboxy peptidase like protein 5 [Caenorhabditis elegans]
|
AVA09673.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0070008
|
GO:0008150_0.782|GO:0005575_0.651|GO:0110165_0.643|GO:0016020_0.558|GO:0005622_0.502
|
IPR008758+55-494+|IPR029058+53-503_62-231+|IPR042269+216-395+
|
— |
PF05577+55-494+Serine_carboxypeptidase_S28
|
G3DSA:1.20.120.980:FF:000007+216-394+Predicted_protein
|
PTHR11010+34-505+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-528
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.696
|
60408.740
|
6.774
|
2.500
|
25.000
|
15.909
|
43.750
|
56.250
|
13.447
|
11.553
|
47.917
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
903.338
|
183.384
|
893.751
|
1510.522
|
1600.572
|
2260.451
|
1474.191
|
971.963
|
37.993
|
588.048
|
352.310
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.056
|
2.905
|
0.865
|
— |
0.512
|
-0.606
|
-1.322
|
0.743
|
-4.097
|
5.507
|
— | — | — |