Hg_chrom7_TN10mRNA_14893
Organism: Heterodera glycines Gene Locus: chr7:9100761-9107605 Feature type: polypeptideProtein Sequence
Length: 592
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.139 | 1.179 | 0.737 | 0.699 | 0.788 | 1.386 | 0.744 | 1.436 | 1.089 | 1.917 | 0.358 | 1.192 | 1.455 | 0.682 | 1.241 | 1.014 | 1.052 | 0.742 | 1.169 | 0.447 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14055
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.822
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
77-97
|
0.962
|
— | — | — | — |
0.000
|
— | — |
0.086
|
0.028
|
0.011
|
0.202
|
0.212
|
0.515
|
0.465
|
0.010
|
0.851
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011714
|
1.000
|
1.000
|
Hsc_gene_10461.t1
|
Hsc_gene_10461.t1
|
— |
Q20332.1 Protein tweety homolog 1 [Caenorhabditis elegans]
|
KAF7637349.1 Tweety-like protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.940|GO:0110165_0.938|GO:0071944_0.926|GO:0005886_0.923|GO:0016020_0.923|GO:0008150_0.633|GO:0009987_0.592|GO:0051179_0.552|GO:0006810_0.534|GO:0051234_0.534|GO:0003674_0.510
|
IPR006990+6-492_11-469+
|
— |
PF04906+11-469+Tweety
|
— |
PTHR12424+6-492+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
494-592
|
1.000
|
1-493
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
65620.290
|
7.192
|
6.500
|
20.101
|
11.149
|
44.088
|
55.912
|
11.318
|
8.784
|
49.155
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
1015.152
|
2287.082
|
1547.240
|
1061.338
|
666.820
|
1021.537
|
978.946
|
1863.033
|
390.128
|
613.944
|
518.023
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.792
|
-1.245
|
-0.436
|
-0.703
|
0.631
|
— | — |
-0.793
|
— | — | — | — | — |
No JSON data available for plots.