Hg_chrom7_TN10mRNA_14898
Organism: Heterodera glycines Gene Locus: chr7:9131176-9132378 Feature type: polypeptideProtein Sequence
Length: 206
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.847 | 1.693 | 0.441 | 1.841 | 0.809 | 1.245 | 0.462 | 1.456 | 1.726 | 1.378 | 0.736 | 0.857 | 2.023 | 0.653 | 0.594 | 1.318 | 0.398 | 1.103 | 0.373 | 1.142 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14060
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.916
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-20
|
0.902
|
1.000
|
0.000
|
0.000
|
0.155
|
0.330
|
0.082
|
0.196
|
0.111
|
0.129
|
0.111
|
0.123
|
0.257
|
0.915
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011718
|
1.000
|
1.000
|
Hsc_gene_10466.t1
|
Hsc_gene_10466.t1
|
— | — |
GFS82571.1 DUF4773 domain-containing protein [Nephila pilipes]
|
No
|
-0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR031941+85-196+
|
— |
PF15998+85-196+Domain_of_unknown_function_(DUF4773)
|
— |
PTHR36299+68-197+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-206
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.771
|
23182.880
|
7.506
|
4.000
|
17.961
|
14.563
|
41.748
|
58.252
|
10.680
|
7.282
|
48.544
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
526.125
|
44.536
|
359.164
|
448.443
|
560.841
|
310.679
|
84.034
|
445.070
|
75.384
|
1400.473
|
832.578
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.784
|
3.195
|
0.428
|
0.290
|
-0.836
|
-1.885
|
— |
-2.273
|
-4.325
|
— | — | — | — |