Hg_chrom7_TN10mRNA_14901
Organism: Heterodera glycines Gene Locus: chr7:9133511-9139032 Feature type: polypeptideProtein Sequence
Length: 500
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.721 | 1.209 | 0.655 | 0.897 | 0.8 | 1.846 | 0.929 | 0.7 | 0.978 | 1.081 | 0.545 | 2.0 | 1.5 | 1.615 | 0.898 | 1.143 | 1.016 | 0.909 | 0.769 | 0.706 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14061
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
— | — | — |
26-47
|
0.982
|
1-18
|
0.983
|
1.000
|
0.000
|
0.000
|
0.141
|
0.165
|
0.084
|
0.183
|
0.082
|
0.055
|
0.116
|
0.108
|
0.172
|
0.911
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004671
|
1.000
|
2.000
|
Hsc_gene_10467.t1;Hsc_gene_10467.t2
|
Hsc_gene_10467.t2;Hsc_gene_10467.t3;Hsc_gene_10467.t4;Hsc_gene_10467.t5
|
— | — |
KAI1708860.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
XP_054785955
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
272-439
|
2.000
|
1-271;440-500
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
55019.670
|
6.796
|
1.500
|
17.800
|
10.200
|
44.400
|
55.600
|
9.400
|
8.400
|
54.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
536.629
|
177.297
|
195.875
|
227.499
|
218.725
|
91.677
|
21.682
|
136.722
|
10.279
|
1938.991
|
1112.400
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.223
|
0.327
|
— |
-1.240
|
-2.070
|
— |
-2.513
|
-7.656
|
— | — | — | — |