Hg_chrom7_TN10mRNA_14906
Organism: Heterodera glycines Gene Locus: chr7:9150653-9152621 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.744 | 1.149 | 0.634 | 0.301 | 1.211 | 1.044 | 0.692 | 0.581 | 1.034 | 0.589 | 1.762 | 3.591 | 0.888 | 2.292 | 0.653 | 0.914 | 1.239 | 0.749 | 0.0 | 0.598 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14066
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.394
|
0.123
|
0.033
|
0.737
|
0.089
|
0.110
|
0.150
|
0.004
|
0.203
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011721
|
1.000
|
1.000
|
Hsc_gene_10472.t1
|
— | — |
Q8N0Z2.1 Actin-binding Rho-activating protein [Homo sapiens]
|
KAF7637370.1 Costars domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003779|GO:0035025
|
GO:0005575_0.941|GO:0110165_0.937|GO:0005622_0.655|GO:0043226_0.607|GO:0043229_0.595|GO:0016020_0.549|GO:0008150_0.548|GO:0005737_0.537|GO:0009987_0.501
|
IPR026111+8-157+|IPR027817+71-146_72-146+|IPR038095+67-147+
|
SM01283+71-146+
|
PF14705+72-146+Costars
|
— |
PTHR22739+8-157+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;161-344
|
1.000
|
5-160
|
2krh_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.935
|
38003.990
|
10.093
|
16.000
|
26.744
|
6.395
|
49.709
|
50.291
|
15.988
|
10.756
|
52.326
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
479.563
|
237.438
|
640.620
|
329.421
|
66.977
|
105.702
|
13.774
|
839.847
|
1667.236
|
9.992
|
720.240
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.203
|
0.336
|
-0.851
|
-2.332
|
0.673
|
-2.935
|
2.893
|
-5.796
|
7.042
|
-2.195
|
— | — | — |
No JSON data available for plots.