Hg_chrom7_TN10mRNA_14919
Organism: Heterodera glycines Gene Locus: chr7:9214693-9224661 Feature type: polypeptideProtein Sequence
Length: 1,351
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.128 | 1.067 | 1.009 | 0.357 | 1.049 | 1.177 | 0.52 | 1.073 | 0.888 | 1.02 | 0.886 | 1.35 | 0.658 | 2.206 | 0.967 | 1.502 | 0.862 | 0.953 | 0.228 | 0.327 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14078
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.787
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRNATEEEKKKERH,KRDTLRSPGTEARRPKN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.730
|
0.071
|
0.008
|
0.469
|
0.051
|
0.032
|
0.037
|
0.014
|
0.056
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002456
|
3.000
|
1.000
|
Hsc_gene_10492.t1
|
Hsc_gene_10492.t1
|
— | — |
KAI3414073.1 hypothetical protein GPALN_011539 [Globodera pallida]
|
MBN2841899
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR051412+283-739+
|
— | — | — |
PTHR45691+283-739+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-78;289-1155
|
2.000
|
79-288;1156-1351
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.864
|
145508.100
|
6.380
|
-2.500
|
24.574
|
5.922
|
49.519
|
50.481
|
12.731
|
11.843
|
58.771
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
2349.081
|
2638.235
|
1610.219
|
1318.781
|
1532.328
|
1300.758
|
1877.429
|
1106.584
|
901.636
|
5331.875
|
3433.201
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.942
|
-1.137
|
-0.179
|
0.185
|
-0.222
|
0.540
|
-0.338
|
0.905
|
— | — | — | — | — |
No JSON data available for plots.