Hg_chrom7_TN10mRNA_14920
Organism: Heterodera glycines Gene Locus: chr7:9225148-9238981 Feature type: polypeptideProtein Sequence
Length: 1,835
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.229 | 0.608 | 1.011 | 0.132 | 1.017 | 1.719 | 0.876 | 2.698 | 0.557 | 0.552 | 0.405 | 1.186 | 0.515 | 1.582 | 2.135 | 1.152 | 1.045 | 0.834 | 0.629 | 0.801 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14079
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— |
RRRR,RRKIRAIEVRDRKERSR,RRRSSTTQNHPQPRALRR,EEKKRTEEVERRVIRKERRHKSRRMHR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.433
|
0.219
|
0.032
|
0.642
|
0.088
|
0.054
|
0.035
|
0.020
|
0.609
|
0.200
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004506
|
2.000
|
1.000
|
Hsc_gene_10495.t1
|
Hsc_gene_10493.t1
|
— |
Q95QA6.1 Protein pat-12 [Caenorhabditis elegans]
|
KAI1722688.1 protein pat-12 [Ditylenchus destructor]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.964|GO:0009987_0.918|GO:0005575_0.911|GO:0110165_0.908|GO:0032502_0.846|GO:0048856_0.846|GO:0032501_0.837|GO:0007275_0.829|GO:0071840_0.764|GO:0016043_0.760|GO:0009653_0.727|GO:0009790_0.710|GO:0044085_0.695|GO:0034330_0.689|GO:0022607_0.688|GO:0048598_0.683|GO:0034329_0.682|GO:0007044_0.670|GO:0031581_0.670|GO:0150115_0.670|GO:0030054_0.644|GO:0070161_0.560|GO:0030055_0.540|GO:0030056_0.540
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1182;1284-1835
|
1.000
|
1183-1283
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.875
|
203410.110
|
9.740
|
76.500
|
30.191
|
10.790
|
53.951
|
46.049
|
18.529
|
11.662
|
54.659
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
3440.107
|
7424.739
|
3967.162
|
2542.594
|
1714.551
|
5058.749
|
419.681
|
3392.043
|
293.683
|
5635.385
|
3346.084
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.133
|
-1.683
|
-0.533
|
-0.600
|
1.576
|
-3.585
|
-0.677
|
-2.878
|
— | — | — | — | — |
No JSON data available for plots.