Hg_chrom7_TN10mRNA_14921
Organism: Heterodera glycines Gene Locus: chr7:9240605-9246940 Feature type: polypeptideProtein Sequence
Length: 387
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.992 | 0.601 | 0.94 | 0.356 | 1.12 | 1.723 | 0.308 | 1.938 | 1.091 | 1.117 | 1.057 | 1.824 | 0.79 | 1.044 | 2.479 | 1.034 | 0.847 | 0.744 | 0.795 | 0.228 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14080
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRSFIDLEAIEQRKLRQ,KILEPPKPATPRAAHRRRSRSATQRRGRRRRRCHTRAQR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.304
|
0.120
|
0.008
|
0.620
|
0.033
|
0.019
|
0.056
|
0.079
|
0.191
|
0.248
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_10495.t1
|
— |
Q95QA6.1 Protein pat-12 [Caenorhabditis elegans]
|
KAI1722688.1 protein pat-12 [Ditylenchus destructor]
|
No
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.946|GO:0005575_0.924|GO:0110165_0.917|GO:0009987_0.906|GO:0032501_0.816|GO:0032502_0.803|GO:0048856_0.803|GO:0007275_0.776|GO:0071840_0.767|GO:0016043_0.753|GO:0009653_0.707|GO:0009790_0.696|GO:0044085_0.694|GO:0022607_0.690|GO:0048598_0.678|GO:0034330_0.677|GO:0034329_0.675|GO:0007044_0.670|GO:0031581_0.670|GO:0150115_0.670|GO:0030054_0.600|GO:0070161_0.551|GO:0030055_0.540|GO:0030056_0.540
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-53;151-296
|
2.000
|
54-150;297-387
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.550
|
44918.560
|
11.127
|
35.500
|
34.884
|
8.527
|
56.589
|
43.411
|
22.997
|
11.886
|
42.636
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
641.494
|
852.896
|
886.930
|
380.552
|
271.289
|
969.223
|
71.446
|
950.019
|
108.300
|
1081.925
|
664.657
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.172
|
-1.302
|
-1.113
|
-0.520
|
1.852
|
-3.752
|
— |
-3.591
|
-3.429
|
— | — | — | — |
No JSON data available for plots.