Hg_chrom7_TN10mRNA_14924
Organism: Heterodera glycines Gene Locus: chr7:9265750-9268416 Feature type: polypeptideProtein Sequence
Length: 245
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.807 | 0.949 | 1.929 | 0.0 | 1.633 | 0.942 | 0.583 | 0.612 | 1.088 | 1.6 | 1.051 | 2.161 | 1.701 | 0.628 | 1.0 | 1.166 | 0.401 | 0.742 | 0.314 | 0.36 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14083
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-17
|
0.999
|
1.000
|
0.000
|
0.000
|
0.402
|
0.348
|
0.114
|
0.354
|
0.413
|
0.255
|
0.375
|
0.042
|
0.310
|
0.526
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011728
|
1.000
|
1.000
|
Hsc_gene_10499.t1
|
Hsc_gene_10499.t1
|
— | — |
KAI1722694.1 EF hand domain-containing protein [Ditylenchus destructor]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.838|GO:0110165_0.834|GO:0008150_0.706|GO:0005622_0.705|GO:0005737_0.664|GO:0016020_0.661|GO:0009987_0.638|GO:0003674_0.609|GO:0043226_0.547|GO:0043227_0.502|GO:0043229_0.501
|
IPR002048+27-55_32-58_62-90_98-126_101-150_103-152_125-160_129-157_170-198_174-228_202-237_206-234+|IPR011992+32-153_126-229+|IPR018247+71-83_138-150+
|
SM00054+27-55_62-90_98-126_129-157_170-198_206-234+
|
PF13499+103-152_174-228+EF-hand_domain_pair
|
— |
PTHR10827+133-229+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
227-245
|
1.000
|
1-226
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.886
|
27779.280
|
4.255
|
-19.500
|
33.469
|
8.980
|
51.837
|
48.163
|
13.061
|
20.408
|
45.306
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
1197.597
|
211.234
|
24.705
|
45.275
|
1597.906
|
8958.307
|
124.347
|
497.870
|
8.293
|
935.899
|
538.354
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.326
|
-2.359
|
0.984
|
5.109
|
2.503
|
-6.161
|
-4.285
|
-1.854
|
-6.960
|
— | — | — | — |