Hg_chrom7_TN10mRNA_14925
Organism: Heterodera glycines Gene Locus: chr7:9270369-9273483 Feature type: polypeptideProtein Sequence
Length: 399
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.02 | 1.515 | 1.139 | 0.605 | 1.128 | 1.221 | 1.164 | 0.627 | 0.78 | 1.016 | 0.532 | 1.622 | 1.323 | 1.06 | 1.33 | 0.823 | 1.109 | 0.797 | 0.964 | 0.295 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14084
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.621
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
GRPYRRRKNRRP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.091
|
0.943
|
0.033
|
0.274
|
0.044
|
0.070
|
0.136
|
0.012
|
0.059
|
0.129
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011729
|
1.000
|
1.000
|
Hsc_gene_10501.t1
|
Hsc_gene_10501.t1
|
— | — |
KAH7722610.1 Protein Y76A2B.5 [Aphelenchus avenae]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009235
|
— |
IPR019362+145-269_192-266+
|
— |
PF10229+192-266+Methylmalonic_aciduria_and_homocystinuria_type_D_protein
|
— |
PTHR13192+145-269+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
260-399
|
1.000
|
1-259
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
43511.550
|
4.817
|
-9.500
|
24.311
|
8.271
|
48.120
|
51.880
|
11.278
|
13.033
|
56.391
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
1615.810
|
866.379
|
1222.857
|
1098.455
|
1474.043
|
1774.366
|
1855.856
|
1961.564
|
797.684
|
2625.836
|
1842.342
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.268
|
0.205
|
— |
0.392
|
0.283
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.