Hg_chrom7_TN10mRNA_14926
Organism: Heterodera glycines Gene Locus: chr7:9273699-9276140 Feature type: polypeptideProtein Sequence
Length: 368
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.79 | 1.517 | 0.939 | 0.75 | 1.132 | 1.185 | 0.388 | 1.359 | 1.812 | 1.102 | 0.823 | 0.639 | 1.359 | 0.993 | 1.497 | 0.582 | 0.935 | 0.988 | 2.508 | 0.639 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14085
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cell_membrane
|
— |
KRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.393
|
0.284
|
0.048
|
0.398
|
0.183
|
0.186
|
0.238
|
0.013
|
0.479
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004672
|
1.000
|
2.000
|
Hsc_gene_10502.t1;Hsc_gene_10502.t2
|
Hsc_gene_10502.t1;Hsc_gene_10502.t2
|
— | — |
ADI82807.1 dorsal gland cell-specific expression protein [Heterodera avenae]
|
HIN40059
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-368
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.640
|
42945.220
|
8.110
|
8.000
|
27.446
|
13.043
|
48.370
|
51.630
|
15.489
|
11.957
|
45.380
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1153.388
|
897.733
|
1114.569
|
1020.184
|
1008.625
|
1130.740
|
1057.148
|
1478.805
|
1879.481
|
746.037
|
1231.799
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
-0.344
|
— | — | — | — | — |
No JSON data available for plots.