Hg_chrom7_TN10mRNA_14927
Organism: Heterodera glycines Gene Locus: chr7:9276375-9278395 Feature type: polypeptideProtein Sequence
Length: 291
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.759 | 0.639 | 1.25 | 0.592 | 1.432 | 0.969 | 0.368 | 1.203 | 1.145 | 1.579 | 1.354 | 0.809 | 0.859 | 1.322 | 1.403 | 0.442 | 0.62 | 0.729 | 2.115 | 1.718 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14086
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.077
|
0.978
|
0.012
|
0.182
|
0.013
|
0.010
|
0.012
|
0.009
|
0.058
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011730
|
1.000
|
1.000
|
Hsc_gene_10503.t1
|
Hsc_gene_10503.t1
|
— |
Q68EV6.1 Large ribosomal subunit protein bL28m [Xenopus laevis]
|
KAH7722651.1 Protein MRPL-28 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735
|
GO:0005575_0.902|GO:0110165_0.893|GO:0005622_0.854|GO:0005737_0.803|GO:0016020_0.752|GO:0043226_0.731|GO:0043229_0.718|GO:0043227_0.690|GO:0043231_0.660|GO:0005739_0.519
|
IPR026569+48-272+|IPR034704+106-183+
|
— | — | — |
PTHR13528+48-272+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
277-291
|
1.000
|
1-276
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.509
|
34549.780
|
7.713
|
4.500
|
33.677
|
14.089
|
47.079
|
52.921
|
18.213
|
15.464
|
39.519
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
1287.635
|
764.423
|
1086.407
|
1365.090
|
1586.198
|
1242.901
|
1698.139
|
1103.769
|
680.394
|
1805.507
|
1323.316
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.278
|
0.699
|
0.438
|
0.184
|
-0.337
|
0.461
|
-0.278
|
0.765
|
— | — | — | — | — |
No JSON data available for plots.