SCN Proteipedia

Hg_chrom7_TN10mRNA_14929

Organism: Heterodera glycines Gene Locus: chr7:9284634-9298593 Feature type: polypeptide

Protein Sequence

Length: 1,256

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.111	1.389	0.796	0.933	0.889	1.613	0.692	2.07	0.814	1.227	0.519	1.452	0.619	1.102	1.219	1.513	0.901	0.736	0.735	0.398	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_14088	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_Clustered	0.748

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RRGQTHSVQLWIAQKSKKH	17-45	0.962	—	—	—	—	0.000	—	—	0.232	0.211	0.016	0.643	0.144	0.366	0.226	0.011	0.535	0.045

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011731	1.000	1.000	Hsc_gene_10505.t1	Hsc_gene_10505.t1	—	P59672.3 Ankyrin repeat and SAM domain-containing protein 1A [Mus musculus]	KAI1722649.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.880\|GO:0110165_0.871\|GO:0008150_0.761\|GO:0009987_0.719\|GO:0016020_0.670\|GO:0065007_0.633\|GO:0050789_0.614\|GO:0005622_0.610\|GO:0050794_0.602\|GO:0050896_0.557\|GO:0051716_0.527\|GO:0071944_0.518	IPR001660+986-1055_989-1055_990-1050+\|IPR002110+63-129_65-94_65-97_99-129_99-132_133-162_133-165_136-164_166-195_217-246_217-249_217-273_249-278_249-281+\|IPR006020+1128-1256_1133-1251_1133-1252+\|IPR011993+1115-1256+\|IPR013761+983-1062_988-1053+\|IPR033635+1132-1255+\|IPR036770+6-202_62-289_203-315+	SM00248+65-94_99-129_133-162_166-195_217-246_249-278+\|SM00454+986-1055+\|SM00462+1128-1256+	PF00023+136-164+Ankyrin_repeat\|PF00536+990-1050+SAM_domain_(Sterile_alpha_motif)\|PF00640+1133-1252+Phosphotyrosine_interaction_domain_(PTB/PID)\|PF12796+63-129_217-273+Ankyrin_repeats_(3_copies)	—	PTHR24174+1132-1255+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	288-449;516-885	3.000	1-287;450-515;886-1256	7txd_L	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.841	137135.700	7.338	22.000	23.248	8.678	51.592	48.408	13.535	9.713	55.096

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1231.735	1580.404	1649.289	930.439	781.595	1462.711	1185.969	1977.450	1196.786	903.303	1029.081

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.167	-0.901	-0.717	-0.283	0.918	-0.293	0.331	-0.596	—	—	—	—	—

No JSON data available for plots.

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