Hg_chrom7_TN10mRNA_14932
Organism: Heterodera glycines Gene Locus: chr7:9340643-9343157 Feature type: polypeptideProtein Sequence
Length: 379
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.197 | 1.227 | 0.911 | 1.183 | 0.704 | 1.082 | 0.565 | 1.979 | 0.352 | 1.212 | 0.68 | 1.086 | 1.026 | 0.964 | 1.185 | 1.545 | 1.211 | 0.919 | 1.015 | 0.543 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14091
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
40-62
|
0.885
|
— | — | — | — |
0.000
|
— | — |
0.278
|
0.433
|
0.051
|
0.651
|
0.159
|
0.430
|
0.481
|
0.073
|
0.376
|
0.096
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011732
|
1.000
|
1.000
|
Hsc_gene_26509.t1
|
Hsc_gene_26509.t1;Hsc_gene_26509.t2
|
— |
Q8IQG1.3 MOB kinase activator-like 2 [Drosophila melanogaster]
|
KAI1722671.1 mob1/phocein family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.890|GO:0110165_0.890|GO:0005622_0.784|GO:0008150_0.763|GO:0065007_0.716|GO:0009987_0.711|GO:0050789_0.710|GO:0050794_0.697|GO:0005737_0.645|GO:0016020_0.602
|
IPR005301+113-290_117-288_121-287+|IPR036703+112-300_116-294+
|
SM01388+117-288+
|
PF03637+121-287+Mob1/phocein_family
|
— |
PTHR22599+113-290+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
50-98;304-379
|
2.000
|
1-49;99-303
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.850
|
41519.640
|
8.069
|
11.500
|
23.483
|
10.818
|
51.187
|
48.813
|
14.248
|
9.235
|
58.047
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
red
|
1929.648
|
2189.021
|
1278.515
|
812.856
|
892.617
|
1700.175
|
1618.787
|
2902.132
|
987.158
|
3429.051
|
2382.526
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.005
|
-1.567
|
-0.545
|
— |
0.944
|
— |
0.666
|
-0.700
|
— | — | — | — | — |
No JSON data available for plots.