Hg_chrom7_TN10mRNA_14936
Organism: Heterodera glycines Gene Locus: chr7:9358878-9361704 Feature type: polypeptideProtein Sequence
Length: 321
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.05 | 1.449 | 1.359 | 0.537 | 1.35 | 0.959 | 0.816 | 0.623 | 1.246 | 0.842 | 1.369 | 0.733 | 1.644 | 1.078 | 0.636 | 0.89 | 0.817 | 0.614 | 0.719 | 0.825 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14095
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.864
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.400
|
0.263
|
0.037
|
0.678
|
0.102
|
0.041
|
0.087
|
0.004
|
0.452
|
0.430
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000917
|
4.000
|
2.000
|
Hsc_gene_26505.t1;Hsc_gene_26505.t2
|
Hsc_gene_26505.t1;Hsc_gene_26505.t2
|
— |
Q18066.3 Disorganized muscle protein 1 [Caenorhabditis elegans]
|
KAI3414052.1 Dimethyladenosine transferase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.810|GO:0110165_0.810|GO:0008150_0.769|GO:0009987_0.699|GO:0005622_0.604|GO:0003674_0.583|GO:0071840_0.536|GO:0005737_0.527|GO:0016043_0.527|GO:0043226_0.514
|
IPR003598+18-90_222-297+|IPR003599+10-101_169-308+|IPR007110+7-101_106-200_233-306+|IPR013098+18-99_106-200_227-307+|IPR013783+8-100_103-204_218-310+|IPR036179+6-102_106-204_228-310+|IPR050958+20-313+
|
SM00408+18-90_222-297+|SM00409+10-101_169-308+
|
PF07679+18-99_106-200_227-307+Immunoglobulin_I-set_domain
|
G3DSA:2.60.40.10:FF:000032+3-104+palladin_isoform_X1
|
PTHR45080+20-313+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23;295-321
|
1.000
|
24-294
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.556
|
35660.870
|
4.799
|
-9.000
|
28.972
|
10.903
|
50.156
|
49.844
|
13.396
|
15.576
|
52.025
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
saddlebrown
|
1460.841
|
1845.870
|
1342.373
|
1138.537
|
1228.666
|
3723.155
|
1014.207
|
4751.289
|
286.268
|
534.941
|
428.367
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.689
|
-0.834
|
-0.129
|
— |
1.614
|
-1.865
|
— |
-2.081
|
— | — | — | — | — |
No JSON data available for plots.