Hg_chrom7_TN10mRNA_14942
Organism: Heterodera glycines Gene Locus: chr7:9394968-9396374 Feature type: polypeptideProtein Sequence
Length: 150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.698 | 0.775 | 1.697 | 2.069 | 1.222 | 2.564 | 0.397 | 1.333 | 0.741 | 0.901 | 1.616 | 1.961 | 1.111 | 0.128 | 1.088 | 1.143 | 0.328 | 0.808 | 0.513 | 0.588 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14100
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.454
|
0.805
|
0.015
|
0.531
|
0.141
|
0.137
|
0.235
|
0.052
|
0.043
|
0.132
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011734
|
1.000
|
1.000
|
Hsc_gene_26498.t1
|
Hsc_gene_26498.t1
|
— | — |
KAK6026432.1 FG-GAP repeat protein [Ostertagia ostertagi]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.923|GO:0110165_0.916|GO:0005622_0.886|GO:0043226_0.830|GO:0043229_0.822|GO:0005737_0.782|GO:0043228_0.651|GO:0043232_0.651|GO:0099080_0.570|GO:0099081_0.557|GO:0099512_0.557|GO:0043292_0.540|GO:0055120_0.540
|
IPR008560+9-148_12-142+
|
— |
PF05811+12-142+Eukaryotic_protein_of_unknown_function_(DUF842)
|
— |
PTHR21096+9-148+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20
|
1.000
|
21-150
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.604
|
17394.660
|
6.811
|
1.000
|
35.333
|
9.333
|
58.667
|
41.333
|
18.667
|
16.667
|
44.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightgreen
|
912.328
|
856.934
|
553.807
|
1006.197
|
1070.258
|
785.228
|
548.332
|
554.957
|
245.876
|
1791.135
|
1128.881
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.860
|
0.095
|
0.970
|
— |
-0.432
|
-0.507
|
-0.605
|
— |
-2.993
|
— | — | — | — |
No JSON data available for plots.