Hg_chrom7_TN10mRNA_14943
Organism: Heterodera glycines Gene Locus: chr7:9396578-9401102 Feature type: polypeptideProtein Sequence
Length: 650
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 0.68 | 1.399 | 0.955 | 0.795 | 1.341 | 0.788 | 1.308 | 0.957 | 1.247 | 0.559 | 1.176 | 1.581 | 1.361 | 0.879 | 1.099 | 1.059 | 1.352 | 0.592 | 0.317 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14101
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.962
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — |
0.960
|
0.434
|
1.000
|
— |
0.408
|
0.023
|
0.017
|
0.261
|
0.377
|
0.548
|
0.394
|
0.027
|
0.652
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011735
|
1.000
|
1.000
|
Hsc_gene_26497.t2
|
Hsc_gene_26497.t1;Hsc_gene_26497.t2
|
— |
P30639.1 Protein linkin [Caenorhabditis elegans]
|
KAI1708830.1 protein linkin [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.900|GO:0110165_0.896|GO:0016020_0.834|GO:0071944_0.625|GO:0005886_0.613
|
IPR013517+38-100+|IPR024881+29-650+|IPR028994+23-193_30-436+
|
— |
PF13517+38-100+FG-GAP-like_repeat
|
— |
PTHR13412+29-650+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-650
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
71232.900
|
4.734
|
-20.500
|
23.077
|
10.154
|
45.385
|
54.615
|
10.615
|
12.462
|
56.308
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1361.918
|
1414.850
|
1451.931
|
1336.526
|
1550.852
|
1621.403
|
2160.081
|
1880.907
|
1038.292
|
898.465
|
958.391
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.192
|
-0.219
|
— |
0.182
|
— |
0.424
|
— |
0.343
|
— | — | — | — | — |