Hg_chrom7_TN10mRNA_14945
Organism: Heterodera glycines Gene Locus: chr7:9404424-9408711 Feature type: polypeptideProtein Sequence
Length: 600
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.066 | 0.814 | 0.576 | 1.034 | 0.389 | 1.538 | 0.516 | 1.75 | 0.556 | 0.518 | 0.505 | 0.784 | 0.648 | 3.59 | 1.939 | 0.881 | 1.448 | 0.859 | 1.667 | 0.196 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14103
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.698
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRPPTRRRRPPPRRPRQ,KRKNRKKCQQQAQKRRAL,RRRRPPPRRPRQHRKHHRR,RRWRTTRINFSGNRAPRRR,NRAPRRRATPPPHPPRRQPQRRQPQRRHRHHHNRGHRWSHHHRPR
|
4-24
|
0.978
|
— | — | — | — |
0.000
|
— | — |
0.584
|
0.088
|
0.020
|
0.484
|
0.038
|
0.031
|
0.028
|
0.002
|
0.112
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002456
|
3.000
|
1.000
|
Hsc_gene_10492.t1
|
— | — | — | — |
WP_143318557
|
0.500
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-556
|
1.000
|
557-600
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.894
|
65928.100
|
11.461
|
54.500
|
21.833
|
8.667
|
46.333
|
53.667
|
16.333
|
5.500
|
62.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightyellow
|
129.815
|
62.334
|
35.598
|
86.439
|
120.796
|
64.905
|
122.077
|
72.726
|
7.425
|
350.543
|
203.492
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.039
|
0.335
|
1.389
|
0.450
|
-0.881
|
0.921
|
— |
0.891
|
-5.730
|
3.777
|
— | — | — |
No JSON data available for plots.