SCN Proteipedia

Hg_chrom7_TN10mRNA_14948

Organism: Heterodera glycines Gene Locus: chr7:9423610-9430102 Feature type: polypeptide

Protein Sequence

Length: 1,201

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.423	1.065	0.984	0.66	0.888	1.43	0.763	1.707	0.981	1.193	0.719	1.127	0.81	0.785	1.02	1.118	1.119	0.908	0.448	0.588	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_14106	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|cell_membrane	—	KKKK,KRSR	—	—	—	—	—	—	0.000	—	—	0.181	0.272	0.027	0.626	0.115	0.469	0.288	0.042	0.684	0.126

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011739	1.000	1.000	Hsc_gene_26492.t1	Hsc_gene_26491.t1;Hsc_gene_26492.t1	—	Q5GIG6.4 Serine/threonine-protein kinase TNNI3K [Mus musculus]	KAH7722632.1 serine/threonine-protein kinase TNNI3K [Aphelenchus avenae]	No	-0.210

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005515\|GO:0005524\|GO:0006468	GO:0008150_0.966\|GO:0009987_0.819\|GO:0003674_0.790\|GO:0005575_0.784\|GO:0110165_0.783\|GO:0065007_0.734\|GO:0050789_0.713\|GO:0003824_0.710\|GO:0005622_0.667\|GO:0016740_0.636\|GO:0140096_0.623\|GO:0005737_0.586\|GO:0016772_0.580\|GO:0016301_0.566\|GO:0016773_0.563\|GO:0050896_0.562\|GO:0004672_0.555\|GO:0050794_0.533	IPR000719+595-862+\|IPR001245+595-858+\|IPR002110+40-70_173-202_173-203_173-205_208-237_212-240_212-270_241-270_241-273_274-303_274-306_279-369_307-333_307-336_308-323_344-374_376-442_379-409_413-442_413-445_429-443_514-544+\|IPR011009+590-859+\|IPR017441+601-622+\|IPR036770+147-246_172-441_247-338_339-560+\|IPR050745+31-283+	SM00248+40-70_173-202_208-237_241-270_274-303_307-336_344-374_379-409_413-442_514-544+	PF00023+173-203+Ankyrin_repeat\|PF07714+595-858+Protein_tyrosine_and_serine/threonine_kinase\|PF12796+212-270_279-369_376-442+Ankyrin_repeats_(3_copies)	—	PTHR24189+31-283+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	886-989;1035-1201	2.000	1-885;990-1034	4yfi_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.654	129889.270	6.856	8.500	23.897	8.909	48.709	51.291	13.156	10.741	55.287

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	711.900	3857.702	938.807	533.079	248.316	364.754	155.604	1057.009	184.547	292.925	246.477

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.268	-2.993	-0.708	-1.134	0.569	-1.221	1.434	-2.625	—	—	—	—	—

No JSON data available for plots.

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