SCN Proteipedia

Hg_chrom7_TN10mRNA_14949

Organism: Heterodera glycines Gene Locus: chr7:9430317-9435913 Feature type: polypeptide

Protein Sequence

Length: 624

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.857	1.006	0.816	0.939	0.775	0.986	0.668	1.122	1.104	1.299	0.413	1.603	1.335	1.202	1.177	1.236	1.051	0.996	1.479	1.273	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_14107	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RLIKRRS	—	—	53-75	0.996	—	—	0.025	—	—	0.060	0.112	0.031	0.137	0.178	0.218	0.270	0.022	0.799	0.033

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011740	1.000	1.000	Hsc_gene_26489.t1	Hsc_gene_26489.t1;Hsc_gene_26490.t1	—	Q95Y52.1 Probable ligand-gated ion channel 46 [Caenorhabditis elegans]	KAI3414044.1 putative ligand-gated ion channel 46 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0034220	GO:0008150_0.968\|GO:0009987_0.934\|GO:0005575_0.914\|GO:0110165_0.900\|GO:0016020_0.865\|GO:0065007_0.853\|GO:0071944_0.851\|GO:0051179_0.843\|GO:0005886_0.839\|GO:0006810_0.837\|GO:0051234_0.837\|GO:0050789_0.827\|GO:0003674_0.810\|GO:0023052_0.774\|GO:0055085_0.774\|GO:0007154_0.771\|GO:0006811_0.744\|GO:0034220_0.731\|GO:0050896_0.700\|GO:0050794_0.681\|GO:0005215_0.643\|GO:0022857_0.643\|GO:0007267_0.638\|GO:0051716_0.638\|GO:0015075_0.629\|GO:0030054_0.628\|GO:0015267_0.625\|GO:0022803_0.625\|GO:0032501_0.623\|GO:0005216_0.614\|GO:0045202_0.604\|GO:0022836_0.591\|GO:0099536_0.589\|GO:0099537_0.589\|GO:0007268_0.588\|GO:0098916_0.588\|GO:0015276_0.568\|GO:0022834_0.568\|GO:0007165_0.564\|GO:0098660_0.550\|GO:0005230_0.548\|GO:0098590_0.529\|GO:0060089_0.517\|GO:0006820_0.516\|GO:0015698_0.516\|GO:0006821_0.515\|GO:0038023_0.515\|GO:0065008_0.514\|GO:0098656_0.512	IPR006028+310-330_336-357_370-391_601-621+\|IPR006029+315-618+\|IPR006201+104-502_145-161_180-191_226-240_301-313+\|IPR006202+105-306+\|IPR018000+226-240+\|IPR036719+308-622+\|IPR036734+94-304_101-306+\|IPR038050+305-422_502-624+	—	PF02931+105-306+Neurotransmitter-gated_ion-channel_ligand_binding_domain\|PF02932+315-618+Neurotransmitter-gated_ion-channel_transmembrane_region	G3DSA:1.20.58.390:FF:000039+304-424+Ligand-Gated_ion_Channel	PTHR18945+104-502+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	536-624	1.000	1-535	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.739	70064.070	6.830	3.000	19.872	13.301	43.109	56.891	10.737	9.135	52.404

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	greenyellow	489.209	371.432	1169.916	403.802	124.875	97.583	129.331	675.585	242.656	843.599	586.052

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.427	—	-1.426	-1.726	-0.341	0.414	2.691	-2.247	—	—	—	—	—

No JSON data available for plots.

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