Hg_chrom7_TN10mRNA_14951
Organism: Heterodera glycines Gene Locus: chr7:9445148-9449317 Feature type: polypeptideProtein Sequence
Length: 915
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.737 | 1.195 | 1.391 | 0.641 | 1.257 | 1.737 | 0.338 | 1.585 | 0.753 | 1.063 | 0.811 | 0.9 | 1.002 | 0.967 | 1.227 | 1.717 | 1.111 | 0.58 | 1.009 | 0.579 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14109
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.500
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRR,RKSK,IKKIRRRGRNKLA,KKKQNLTKQQMSKINKK,RRRGRNKLAAQKCRERRV,KRRRKMVHSNSQRQQKKKQ,RRRKMVHSNSQRQQKKKQN,KKQNLTKQQMSKINKKDTK,KKDTKSSKLDYELELKRRQ,KKIRRRGRNKLAAQKCRER,RRQDYSEFVHSTISARRRA
|
— | — |
53-74
|
0.998
|
— | — |
0.000
|
— | — |
0.733
|
0.262
|
0.125
|
0.323
|
0.253
|
0.060
|
0.151
|
0.156
|
0.102
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011742
|
1.000
|
1.000
|
Hsc_gene_26486.t1
|
— | — |
P34707.2 Protein skinhead-1 [Caenorhabditis elegans]
|
KAI3416365.1 Nuclear factor (Erythroid-derived 2)-like 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000978|GO:0003677|GO:0003700|GO:0006355|GO:0006357
|
GO:0008150_0.966|GO:0005575_0.939|GO:0110165_0.939|GO:0065007_0.934|GO:0009987_0.930|GO:0050789_0.926|GO:0050794_0.913|GO:0005622_0.865|GO:0043226_0.825|GO:0016020_0.823|GO:0043229_0.817|GO:0008152_0.816|GO:0043170_0.816|GO:0019222_0.815|GO:0031323_0.807|GO:0044237_0.807|GO:0060255_0.794|GO:0044238_0.787|GO:0080090_0.787|GO:0009058_0.786|GO:0009059_0.786|GO:0044249_0.786|GO:0003674_0.779|GO:0005488_0.779|GO:0010467_0.776|GO:0009889_0.775|GO:0031326_0.773|GO:0010468_0.768|GO:0010556_0.768|GO:0043227_0.711|GO:0006139_0.691|GO:0016070_0.691|GO:0034654_0.691|GO:0090304_0.691|GO:0141187_0.691|GO:0032774_0.688|GO:0043231_0.687|GO:0019219_0.677|GO:0006351_0.672|GO:0051252_0.670|GO:2001141_0.666|GO:0006355_0.664|GO:0097159_0.646|GO:0003676_0.639|GO:0003677_0.622|GO:0005515_0.621|GO:0048518_0.620|GO:0043565_0.616|GO:0003690_0.614|GO:1990837_0.612|GO:0000976_0.611|GO:0001067_0.611|GO:0032502_0.596|GO:0048856_0.596|GO:0005634_0.584|GO:0009893_0.566|GO:0010604_0.556|GO:0140110_0.549|GO:0048522_0.543|GO:0003700_0.536|GO:0032501_0.520|GO:0048519_0.520|GO:0006366_0.516|GO:0050896_0.503|GO:0048523_0.501
|
IPR004826+784-828+|IPR004827+801-816+|IPR008917+753-820+|IPR047167+154-818+
|
— |
PF03131+784-828+bZIP_Maf_transcription_factor
|
— |
PTHR24411+154-818+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-34;198-462;619-767
|
3.000
|
35-197;463-618;768-915
|
1skn_P
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.530
|
103802.180
|
5.251
|
-20.500
|
29.727
|
10.055
|
60.437
|
39.563
|
14.536
|
15.191
|
51.475
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
magenta
|
1409.015
|
1015.481
|
1754.939
|
1704.598
|
2588.330
|
1457.665
|
1727.015
|
1838.781
|
1127.460
|
786.291
|
932.506
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.562
|
0.610
|
— |
0.570
|
-0.813
|
0.254
|
— | — | — | — | — | — | — |
No JSON data available for plots.