Hg_chrom7_TN10mRNA_14952
Organism: Heterodera glycines Gene Locus: chr7:9449571-9453332 Feature type: polypeptideProtein Sequence
Length: 648
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.825 | 1.077 | 0.898 | 0.745 | 1.209 | 1.385 | 0.625 | 1.466 | 0.892 | 1.46 | 1.263 | 1.452 | 0.9 | 0.594 | 2.11 | 0.838 | 0.658 | 0.842 | 0.119 | 0.726 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14110
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRK,KKRRTKRGGTKRRPKM,KKVIVTAQRKKEEKRLPK,RKFILGALIHFIRRCTKKR,RRCTKKRRTKRGGTKRRPK,RKETKSLKEVLQKFRHAKK,RKKNLDQAKKVIVTAQRKK,KKNLDQAKKVIVTAQRKKE,EGRPGKEAYGRPNRGPHVGRTNRELAKRKPVQMIRQKVRGRNRQRSFRDRQKSLRAYLLRQQGKKVK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.902
|
0.059
|
0.011
|
0.200
|
0.037
|
0.036
|
0.058
|
0.009
|
0.030
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011743
|
1.000
|
1.000
|
Hsc_gene_26485.t1
|
Hsc_gene_26485.t1
|
— |
Q9NEU2.4 Protein SDA1 homolog [Caenorhabditis elegans]
|
KAI1724811.1 SDA1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000055|GO:0042273
|
GO:0005575_0.774|GO:0110165_0.764|GO:0005622_0.716|GO:0016020_0.702|GO:0043226_0.688|GO:0043229_0.668|GO:0008150_0.625|GO:0043227_0.604|GO:0043231_0.590|GO:0005634_0.526
|
IPR012977+73-474+|IPR016024+46-533+|IPR027312+541-645+|IPR048292+600-643+
|
— |
PF08158+73-474+SDA1,_HEAT_repeat|PF21638+600-643+SDA1,_C-terminal
|
— |
PTHR12730+541-645+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
250-296;495-648
|
2.000
|
1-249;297-494
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
74620.880
|
10.417
|
51.500
|
33.796
|
8.796
|
53.704
|
46.296
|
21.605
|
12.191
|
42.593
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
orange
|
1594.475
|
1574.699
|
1443.672
|
1563.776
|
1587.424
|
1531.482
|
1450.315
|
1299.579
|
2363.316
|
1284.237
|
1746.699
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.354
|
-0.147
|
0.224
|
— | — | — |
-0.343
|
0.302
|
— | — | — | — | — |
No JSON data available for plots.