Hg_chrom7_TN10mRNA_14954
Organism: Heterodera glycines Gene Locus: chr7:9458051-9460481 Feature type: polypeptideProtein Sequence
Length: 283
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.616 | 1.479 | 1.156 | 1.462 | 1.06 | 2.537 | 0.505 | 2.297 | 0.785 | 0.812 | 0.482 | 2.079 | 1.08 | 0.747 | 1.442 | 0.808 | 0.637 | 1.071 | 0.815 | 1.143 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14112
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
46-70
|
0.975
|
43-64
|
0.982
|
— | — |
0.000
|
— | — |
0.895
|
0.141
|
0.027
|
0.269
|
0.023
|
0.022
|
0.016
|
0.019
|
0.059
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011745
|
1.000
|
1.000
|
Hsc_gene_26482.t2
|
Hsc_gene_26482.t2
|
— | — |
KAI1731124.1 PR domain zinc finger protein 16 [Ditylenchus destructor]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+10-32_10-37_12-32_38-61_38-66_69-92_69-97_71-92_99-123+|IPR036236+10-58+|IPR050527+11-184+
|
SM00355+10-32_38-61_69-92_99-123+
|
— | — |
PTHR24388+11-184+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
272-283
|
1.000
|
1-271
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.552
|
32999.930
|
6.427
|
-0.500
|
27.562
|
13.428
|
53.357
|
46.643
|
14.841
|
12.721
|
46.996
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
darkgrey
|
1177.783
|
312.773
|
584.194
|
551.917
|
577.818
|
596.574
|
668.094
|
637.763
|
538.090
|
3275.809
|
2102.501
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
0.682
|
— | — | — | — | — | — |
-2.710
|
— | — | — | — |
No JSON data available for plots.