Hg_chrom7_TN10mRNA_14955
Organism: Heterodera glycines Gene Locus: chr7:9462652-9476618 Feature type: polypeptideProtein Sequence
Length: 1,785
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.762 | 1.173 | 1.171 | 2.453 | 1.419 | 1.264 | 0.867 | 1.261 | 1.133 | 0.84 | 0.789 | 0.659 | 0.731 | 0.937 | 1.326 | 0.896 | 0.891 | 0.705 | 0.646 | 0.807 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14113
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.784
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
cytoplasm|extracellular|cell_membrane
|
nucleus
|
RKRTTELLAKIKRSRE
|
— | — | — | — |
1-20
|
0.995
|
1.000
|
0.000
|
0.000
|
0.146
|
0.332
|
0.014
|
0.483
|
0.133
|
0.131
|
0.136
|
0.012
|
0.598
|
0.715
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001045
|
2.000
|
3.000
|
Hsc_gene_22703.t1;Hsc_gene_26480.t1;Hsc_gene_8466.t1
|
Hsc_gene_22703.t1;Hsc_gene_26480.t1;Hsc_gene_26481.t1
|
— |
P07942.2 Laminin subunit beta-1 [Homo sapiens]
|
KAH7731032.1 laminin subunit beta-1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.859|GO:0110165_0.859|GO:0008150_0.817|GO:0071944_0.713|GO:0009987_0.686|GO:0032502_0.686|GO:0048856_0.666|GO:0032501_0.643|GO:0007275_0.605|GO:0048731_0.561|GO:0030154_0.540|GO:0048869_0.540|GO:0065007_0.526|GO:0050789_0.520|GO:0003674_0.512|GO:0016043_0.506|GO:0071840_0.506
|
IPR000742+333-377_396-440_507-542_774-819_822-866_867-916_919-958_991-1028_1139-1183+|IPR002049+269-326_270-325_270-334_270-336_336-389_337-388_337-397_337-399_399-458_400-457_400-459_460-508_460-509_460-510_480-513_511-549_511-550_773-817_773-818_773-820_792-823_820-864_821-864_821-865_821-867_868-908_868-910_868-915_868-917_884-920_917-976_918-975_978-1022_978-1027_978-1029_1029-1078_1030-1078_1030-1080_1051-1083_1080-1134_1081-1131_1081-1135_1108-1140_1137-1185_1138-1178_1138-1184_1138-1188_1157-1188+|IPR008211+27-268_29-269_33-268+|IPR013015+550-767_554-760+|IPR050440+768-868+
|
SM00136+27-268+|SM00180+270-334_337-397_400-457_460-508_511-550_773-818_821-865_868-915_918-975_978-1027_1030-1078_1081-1135_1138-1188+|SM00181+333-377_396-440_507-542_774-819_822-866_867-916_919-958_991-1028_1139-1183+
|
PF00053+270-325_337-388_400-457_460-508_511-549_773-818_821-864_868-908_918-975_978-1027_1030-1078_1081-1131_1138-1178+Laminin_EGF_domain|PF00055+33-268+Laminin_N-terminal_(Domain_VI)|PF21199+554-760+Laminin_IV_type_B_domain
|
G3DSA:2.10.25.10:FF:000011+820-866+Cadherin_EGF_LAG_seven-pass_G-type_receptor|G3DSA:2.10.25.10:FF:000065+868-915+Laminin_subunit_beta_1|G3DSA:2.10.25.10:FF:000084+402-458+Laminin_subunit_alpha_3|G3DSA:2.10.25.10:FF:000130+978-1029+Laminin_subunit_beta_1|G3DSA:2.10.25.10:FF:000135+459-509_1137-1186+Laminin_subunit_beta_4|G3DSA:2.10.25.10:FF:000280+774-819+Laminin_subunit_beta_4|G3DSA:2.10.25.10:FF:000333+303-401+netrin-4_isoform_X2|G3DSA:2.170.300.10:FF:000001+273-391+Laminin_subunit_beta-1|G3DSA:2.170.300.10:FF:000004+392-494+Laminin_subunit_beta_1|G3DSA:2.60.120.260:FF:000010+19-272+Laminin_subunit_beta_1
|
PTHR10574+768-868+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1208-1387;1437-1732;1785-1785
|
3.000
|
1-1207;1388-1436;1733-1784
|
4aqs_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.511
|
198889.770
|
5.237
|
-35.500
|
29.188
|
8.739
|
50.868
|
49.132
|
14.230
|
14.958
|
53.669
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
3672.049
|
2342.676
|
2440.142
|
3447.539
|
4858.936
|
6519.800
|
4884.079
|
2244.919
|
1768.570
|
4712.002
|
3450.531
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.169
|
0.420
|
0.606
|
0.464
|
0.439
|
-0.407
|
-1.646
|
1.264
|
— | — | — | — | — |