Hg_chrom7_TN10mRNA_14957
Organism: Heterodera glycines Gene Locus: chr7:9482140-9487251 Feature type: polypeptideProtein Sequence
Length: 740
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.597 | 1.414 | 0.86 | 0.839 | 0.991 | 1.317 | 0.547 | 2.23 | 0.871 | 1.644 | 0.594 | 0.874 | 1.689 | 1.117 | 1.379 | 1.139 | 0.798 | 0.799 | 1.143 | 0.517 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14115
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.692
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.296
|
0.245
|
0.014
|
0.579
|
0.149
|
0.448
|
0.272
|
0.054
|
0.258
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011747
|
1.000
|
1.000
|
Hsc_gene_26478.t1
|
Hsc_gene_26478.t1
|
— |
Q5F3L4.1 Protein DENND6A [Gallus gallus]
|
KAF7637634.1 UDENN domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005085
|
GO:0005575_0.910|GO:0110165_0.907|GO:0003674_0.858|GO:0005622_0.826|GO:0005488_0.797|GO:0005515_0.781|GO:0005737_0.728|GO:0098772_0.679|GO:0030234_0.667|GO:0005085_0.650|GO:0030695_0.650|GO:0060589_0.650|GO:0008150_0.629|GO:0009987_0.590|GO:0005829_0.580|GO:0065007_0.574|GO:0016020_0.568|GO:0050789_0.556|GO:0050794_0.539|GO:0043226_0.514|GO:0071944_0.506
|
IPR024224+26-718+|IPR037516+39-622+
|
— | — | — |
PTHR13677+26-718+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
737-740
|
1.000
|
1-736
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
84801.430
|
7.582
|
16.500
|
25.811
|
13.784
|
49.865
|
50.135
|
15.135
|
10.676
|
46.892
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
821.404
|
906.771
|
819.766
|
664.651
|
685.970
|
921.593
|
532.797
|
827.253
|
618.024
|
1120.575
|
905.196
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.375
|
-0.585
|
-0.194
|
— |
0.442
|
-0.784
|
— |
-0.494
|
— | — | — | — | — |
No JSON data available for plots.