Hg_chrom7_TN10mRNA_14958
Organism: Heterodera glycines Gene Locus: chr7:9488486-9491721 Feature type: polypeptideProtein Sequence
Length: 211
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.937 | 1.433 | 1.034 | 2.778 | 0.79 | 0.729 | 1.467 | 0.948 | 0.843 | 0.704 | 0.934 | 0.558 | 1.448 | 0.638 | 1.064 | 0.745 | 0.932 | 0.574 | 0.0 | 1.673 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14116
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-23
|
0.997
|
1.000
|
0.000
|
0.000
|
0.323
|
0.227
|
0.054
|
0.198
|
0.126
|
0.058
|
0.082
|
0.013
|
0.165
|
0.948
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011748
|
1.000
|
1.000
|
Hsc_gene_26477.t1
|
Hsc_gene_26477.t1
|
— |
P81129.1 PI-stichotoxin-She2b [Stichodactyla helianthus]
|
KAI1733250.1 kunitz/Bovine pancreatic trypsin inhibitor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0005575_0.762|GO:0110165_0.762|GO:0008150_0.722|GO:0003674_0.600|GO:0009987_0.545
|
IPR002223+27-84_28-83_29-83_58-68_153-209_155-208_155-209_193-208+|IPR006150+109-148+|IPR020901+61-79+|IPR036880+23-85_23-92_152-209_152-211+|IPR053014+43-209+
|
SM00131+27-84_153-209+|SM00289+109-148+
|
PF00014+28-83_155-209+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain
|
— |
PTHR46339+43-209+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-211
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.870
|
22953.770
|
7.560
|
4.000
|
23.697
|
12.796
|
43.602
|
56.398
|
13.270
|
10.427
|
58.294
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
purple
|
743.645
|
963.440
|
406.134
|
636.646
|
1071.725
|
1789.967
|
538.571
|
929.141
|
257.220
|
684.673
|
501.479
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.476
|
-0.735
|
0.757
|
0.719
|
0.755
|
-1.724
|
-1.055
|
-0.644
|
— | — | — | — | — |