Hg_chrom7_TN10mRNA_14960
Organism: Heterodera glycines Gene Locus: chr7:9494345-9496829 Feature type: polypeptideProtein Sequence
Length: 362
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.835 | 0.514 | 0.854 | 1.81 | 1.013 | 0.992 | 0.592 | 1.519 | 1.351 | 1.195 | 0.879 | 1.3 | 2.455 | 1.169 | 0.902 | 1.066 | 0.634 | 0.753 | 1.275 | 0.731 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14118
|
— | — |
1.889
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
3.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.957
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
33-59
|
0.966
|
23-62
|
0.983
|
— | — |
0.000
|
— | — |
0.163
|
0.085
|
0.010
|
0.178
|
0.260
|
0.120
|
0.207
|
0.008
|
0.143
|
0.801
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000917
|
4.000
|
2.000
|
Hsc_gene_26505.t1;Hsc_gene_26505.t2
|
Hsc_gene_26478.t1
|
— |
Q18066.3 Disorganized muscle protein 1 [Caenorhabditis elegans]
|
KAI3414052.1 Dimethyladenosine transferase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.952|GO:0005575_0.922|GO:0110165_0.922|GO:0009987_0.904|GO:0003674_0.767|GO:0005622_0.710|GO:0005737_0.685|GO:0043226_0.672|GO:0071840_0.645|GO:0016020_0.644|GO:0016043_0.638|GO:0005488_0.587|GO:0005515_0.575|GO:0043229_0.571|GO:0071944_0.553|GO:0065007_0.549|GO:0050896_0.524|GO:0050789_0.523|GO:0043227_0.512|GO:0050794_0.504
|
IPR007110+253-347+|IPR013098+253-347+|IPR013783+249-351+|IPR036179+253-351+|IPR050958+227-353+
|
— |
PF07679+253-347+Immunoglobulin_I-set_domain
|
— |
PTHR45080+227-353+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
362-362
|
1.000
|
1-361
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.606
|
41198.750
|
6.977
|
3.500
|
24.033
|
16.022
|
41.436
|
58.564
|
13.260
|
10.773
|
46.685
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
brown
|
280.309
|
253.424
|
301.602
|
249.533
|
239.286
|
339.843
|
1116.358
|
527.775
|
9.303
|
83.941
|
51.953
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.159
|
— | — |
0.522
|
1.726
|
0.526
|
1.225
|
— |
4.964
|
— | — | — |
No JSON data available for plots.