Hg_chrom7_TN10mRNA_14962
Organism: Heterodera glycines Gene Locus: chr7:9501252-9504716 Feature type: polypeptideProtein Sequence
Length: 164
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.993 | 1.276 | 0.887 | 0.631 | 0.61 | 0.313 | 0.798 | 0.61 | 0.949 | 1.318 | 0.924 | 1.793 | 2.033 | 0.352 | 0.622 | 1.394 | 1.2 | 1.016 | 0.938 | 1.793 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14119
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — |
9-31
|
0.999
|
— | — |
0.000
|
— | — |
0.318
|
0.548
|
0.252
|
0.223
|
0.503
|
0.123
|
0.072
|
0.010
|
0.105
|
0.151
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000389
|
7.000
|
1.000
|
Hsc_gene_26507.t1
|
— | — | — |
KAK5986805.1 Benzodiazepine receptor [Trichostrongylus colubriformis]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.924|GO:0005575_0.903|GO:0110165_0.897|GO:0009987_0.856|GO:0006810_0.764|GO:0051179_0.764|GO:0051234_0.764|GO:0016020_0.547|GO:0003674_0.520|GO:0005622_0.516
|
IPR004307+31-150_47-150+|IPR038330+6-155+
|
— |
PF03073+47-150+TspO/MBR_family
|
— |
PTHR10057+31-150+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-164
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
18282.920
|
7.729
|
2.000
|
18.902
|
15.854
|
42.683
|
57.317
|
10.366
|
8.537
|
53.049
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
lightyellow
|
193.912
|
135.803
|
81.893
|
87.641
|
201.357
|
418.840
|
151.705
|
254.948
|
2.056
|
347.255
|
199.312
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.962
|
-0.769
|
— |
1.167
|
1.074
|
-1.456
|
-0.831
|
-0.603
|
-7.442
|
5.513
|
— | — | — |
No JSON data available for plots.