SCN Proteipedia

Hg_chrom7_TN10mRNA_14965

Organism: Heterodera glycines Gene Locus: chr7:9522350-9532276 Feature type: polypeptide

Protein Sequence

Length: 794

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.615	1.406	1.237	2.258	1.071	0.807	0.765	1.385	1.008	1.089	0.782	0.667	1.154	1.235	1.491	0.63	0.908	0.687	0.775	1.259	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_14122	—	—	1.111	1.000	2.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_described	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.384	0.222	0.040	0.416	0.169	0.117	0.084	0.066	0.330	0.329

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004679	2.000	1.000	Hsc_gene_26475.t1	Hsc_gene_26475.t1;Hsc_gene_26480.t1	—	P02469.3 Laminin subunit beta-1 [Mus musculus]	KAH7731032.1 laminin subunit beta-1 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.892\|GO:0009987_0.812\|GO:0005575_0.802\|GO:0110165_0.784\|GO:0065007_0.720\|GO:0003674_0.716\|GO:0050789_0.716\|GO:0050794_0.664\|GO:0032502_0.633\|GO:0048856_0.620\|GO:0032501_0.616\|GO:0007275_0.581\|GO:0016043_0.563\|GO:0071840_0.563\|GO:0005622_0.559\|GO:0048731_0.540\|GO:0071944_0.534\|GO:0050896_0.523\|GO:0030154_0.521\|GO:0048869_0.521\|GO:0005488_0.503\|GO:0016020_0.501	IPR000719+497-789_549-789_610-789+\|IPR002049+232-293_252-284_253-285_295-348_296-347_296-356_296-358_358-417_359-416_359-418_419-467_419-468_419-469_439-472_470-508_470-509+\|IPR008211+28-259_72-257_153-249+\|IPR008271+620-632+\|IPR011009+560-791+\|IPR013015+513-574+\|IPR050440+149-428+	SM00136+72-257+\|SM00180+232-293_296-356_359-416_419-467_470-509+\|SM00220+549-789+	PF00053+252-284_296-347_359-416_419-467_470-508+Laminin_EGF_domain\|PF00055+153-249+Laminin_N-terminal_(Domain_VI)\|PF00069+610-789+Protein_kinase_domain\|PF21199+513-574+Laminin_IV_type_B_domain	G3DSA:1.10.510.10:FF:000624+591-793+Mitogen-activated_protein_kinase\|G3DSA:2.10.25.10:FF:000084+361-417+Laminin_subunit_alpha_3\|G3DSA:2.10.25.10:FF:000135+418-468+Laminin_subunit_beta_4\|G3DSA:2.10.25.10:FF:000333+262-360+netrin-4_isoform_X2\|G3DSA:2.170.300.10:FF:000001+240-350+Laminin_subunit_beta-1\|G3DSA:2.170.300.10:FF:000004+351-453+Laminin_subunit_beta_1	PTHR10574+149-428+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-794	4aqs_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.684	90496.510	6.822	5.000	28.463	12.217	47.607	52.393	15.239	13.224	52.015

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	brown	163.644	171.962	259.385	193.345	157.679	221.322	238.989	277.901	165.625	21.503	83.270

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.363	—	-0.315	-0.327	0.505	—	—	—	—	—	—	—	—

No JSON data available for plots.

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