Hg_chrom7_TN10mRNA_14966
Organism: Heterodera glycines Gene Locus: chr7:9550323-9558722 Feature type: polypeptideProtein Sequence
Length: 1,177
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.324 | 1.265 | 0.865 | 0.791 | 1.26 | 1.699 | 0.698 | 1.232 | 1.001 | 1.516 | 0.991 | 2.099 | 0.873 | 0.507 | 1.127 | 0.874 | 0.515 | 0.579 | 0.784 | 0.7 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14123
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.511
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.407
|
0.120
|
0.022
|
0.548
|
0.163
|
0.193
|
0.248
|
0.013
|
0.140
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004677
|
2.000
|
1.000
|
Hsc_gene_26500.t1
|
Hsc_gene_26501.t1
|
— |
Q20255.3 Tetratricopeptide repeat protein 21 homolog [Caenorhabditis elegans]
|
KAI3422342.1 Tetratricopeptide repeat protein 21B [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.957|GO:0009987_0.900|GO:0007017_0.681|GO:0007018_0.678|GO:0005575_0.658|GO:0110165_0.656|GO:0005622_0.593|GO:0032502_0.592|GO:0048856_0.591|GO:0016020_0.563|GO:0030154_0.549|GO:0048869_0.549|GO:0043226_0.531|GO:0065007_0.508
|
IPR011990+380-438_383-820_485-823_834-1148+|IPR019734+132-165_377-410_411-444_584-617_588-617_618-651_693-726_750-783_784-817_1091-1124+|IPR040364+456-1172+
|
SM00028+132-165_377-410_411-444_584-617_618-651_693-726_750-783_784-817_1091-1124+
|
PF13181+588-617+Tetratricopeptide_repeat|PF14559+388-436+Tetratricopeptide_repeat
|
— |
PTHR14699+456-1172+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;877-962;1177-1177
|
2.000
|
4-876;963-1176
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
131671.370
|
7.219
|
11.500
|
26.848
|
9.006
|
48.173
|
51.827
|
14.528
|
12.319
|
45.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
50.866
|
100.058
|
13.714
|
18.745
|
27.226
|
41.364
|
41.384
|
46.672
|
28.601
|
92.650
|
65.200
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.094
|
-2.554
|
— | — |
0.619
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.