Hg_chrom8_TN10mRNA_14970
Organism: Heterodera glycines Gene Locus: chr8:48587-50515 Feature type: polypeptideProtein Sequence
Length: 121
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 0.961 | 1.352 | 1.995 | 0.964 | 0.848 | 0.885 | 1.24 | 0.735 | 1.787 | 1.127 | 3.889 | 0.689 | 0.477 | 0.843 | 0.59 | 0.677 | 0.877 | 0.0 | 0.243 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14127
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.676
|
0.204
|
0.032
|
0.542
|
0.118
|
0.164
|
0.089
|
0.007
|
0.062
|
0.168
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000142
|
11.000
|
2.000
|
Hsc_gene_11567.t1;Hsc_gene_23079.t1
|
— | — |
Q20500.1 Intracellular phospholipase A2 [Caenorhabditis elegans]
|
KJH40752.1 ankyrin repeat protein [Dictyocaulus viviparus]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.763|GO:0005575_0.742|GO:0110165_0.728|GO:0009987_0.609|GO:0005622_0.605|GO:0005737_0.524|GO:0065007_0.523|GO:0050896_0.509
|
IPR002110+5-82_26-55_26-58_59-85_59-89+|IPR036770+1-111_3-92+|IPR051070+3-81+
|
SM00248+26-55_59-89+
|
PF12796+5-82+Ankyrin_repeats_(3_copies)
|
— |
PTHR46680+3-81+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-121
|
4hqd_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.568
|
13247.530
|
6.209
|
-0.500
|
27.273
|
5.785
|
42.975
|
57.025
|
14.050
|
13.223
|
50.413
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
white
|
38.849
|
36.468
|
10.327
|
19.631
|
70.368
|
251.528
|
10.261
|
30.057
|
0.514
|
8.841
|
5.272
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.049
|
-1.030
|
1.036
|
1.810
|
1.852
|
-4.606
|
-3.175
|
-1.403
|
— |
4.668
|
— | — | — |
No JSON data available for plots.