Hg_chrom8_TN10mRNA_14971
Organism: Heterodera glycines Gene Locus: chr8:49174-50515 Feature type: polypeptideProtein Sequence
Length: 156
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 0.596 | 1.049 | 1.768 | 0.855 | 0.657 | 0.763 | 1.282 | 0.57 | 1.646 | 1.457 | 3.017 | 1.425 | 0.616 | 1.177 | 0.824 | 0.525 | 0.971 | 0.0 | 0.754 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14127
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRKKKFFVSKLFCLRGRLK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.563
|
0.299
|
0.014
|
0.403
|
0.129
|
0.081
|
0.143
|
0.025
|
0.129
|
0.194
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000142
|
11.000
|
2.000
|
Hsc_gene_11567.t1;Hsc_gene_23079.t1
|
— | — |
Q20500.1 Intracellular phospholipase A2 [Caenorhabditis elegans]
|
KJH40752.1 ankyrin repeat protein [Dictyocaulus viviparus]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.721|GO:0005575_0.715|GO:0110165_0.703|GO:0005622_0.612|GO:0009987_0.584|GO:0005737_0.509
|
IPR002110+5-83_26-55_26-58_59-85_59-89+|IPR036770+1-116_3-92+|IPR051070+3-81+
|
SM00248+26-55_59-89+
|
PF12796+5-83+Ankyrin_repeats_(3_copies)
|
— |
PTHR46680+3-81+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-156
|
4hqd_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.649
|
17500.650
|
8.880
|
9.000
|
28.846
|
10.256
|
42.949
|
57.051
|
17.949
|
10.897
|
46.795
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
white
|
38.849
|
36.468
|
10.327
|
19.631
|
70.368
|
251.528
|
10.261
|
30.057
|
0.514
|
8.841
|
5.272
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.049
|
-1.030
|
1.036
|
1.810
|
1.852
|
-4.606
|
-3.175
|
-1.403
|
— |
4.668
|
— | — | — |
No JSON data available for plots.