Hg_chrom8_TN10mRNA_14972
Organism: Heterodera glycines Gene Locus: chr8:52751-57900 Feature type: polypeptideProtein Sequence
Length: 406
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.974 | 0.859 | 0.493 | 0.595 | 0.903 | 1.263 | 0.997 | 1.724 | 1.095 | 1.165 | 0.373 | 1.304 | 1.095 | 0.568 | 1.81 | 1.232 | 1.413 | 0.821 | 1.895 | 0.652 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14128
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.969
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
52-129
|
0.988
|
— | — |
0.001
|
— | — |
0.169
|
0.807
|
0.075
|
0.151
|
0.249
|
0.186
|
0.147
|
0.134
|
0.187
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000730
|
4.000
|
2.000
|
Hsc_gene_16206.t1;Hsc_gene_6844.t1
|
Hsc_gene_16206.t1;Hsc_gene_676.t1;Hsc_gene_6844.t1
|
— |
Q6DG32.1 Solute carrier family 25 member 36-A [Danio rerio]
|
KAI3407796.1 hypothetical protein GPALN_014134 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015218
|
GO:0005575_0.862|GO:0110165_0.855|GO:0008150_0.833|GO:0016020_0.783|GO:0005622_0.759|GO:0009987_0.758|GO:0043226_0.717|GO:0043229_0.695|GO:0003674_0.693|GO:0005737_0.692|GO:0043227_0.669|GO:0043231_0.664|GO:0051179_0.612|GO:0006810_0.601|GO:0051234_0.601|GO:0071705_0.540|GO:0055085_0.512
|
IPR018108+38-168_38-172_179-261_181-264_276-359_277-356+|IPR023395+7-93_37-356_94-361+|IPR049562+38-361+
|
— |
PF00153+38-172_181-264_277-356+Mitochondrial_carrier_protein
|
— |
PTHR45829+38-361+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-33;373-406
|
1.000
|
34-372
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.874
|
45324.360
|
9.971
|
20.000
|
22.906
|
12.069
|
48.768
|
51.232
|
14.778
|
8.128
|
50.493
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkgrey
|
620.002
|
627.151
|
356.898
|
378.925
|
641.006
|
966.855
|
582.270
|
330.866
|
474.599
|
900.072
|
717.726
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.043
|
-0.864
|
0.196
|
0.727
|
0.608
|
-0.723
|
-1.657
|
0.959
|
— | — | — | — | — |
No JSON data available for plots.