Hg_chrom8_TN10mRNA_14975
Organism: Heterodera glycines Gene Locus: chr8:85060-90322 Feature type: polypeptideProtein Sequence
Length: 435
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.802 | 1.069 | 0.836 | 0.713 | 0.613 | 1.179 | 0.766 | 2.069 | 1.328 | 1.056 | 0.488 | 1.758 | 1.405 | 1.238 | 1.501 | 0.854 | 0.754 | 1.045 | 0.707 | 1.69 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14131
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.901
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|endoplasmic_reticulum
|
— |
RREVPTQFRSKRRLL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.027
|
0.076
|
0.043
|
0.074
|
0.636
|
0.328
|
0.352
|
0.003
|
0.573
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004680
|
1.000
|
2.000
|
Hsc_gene_6837.t1;Hsc_gene_6837.t2
|
Hsc_gene_6837.t1;Hsc_gene_6837.t2
|
— |
Q9V576.2 Putative phosphatidate phosphatase [Drosophila melanogaster]
|
KAI1705103.1 PAP2 superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006644
|
GO:0008150_0.858|GO:0005575_0.805|GO:0110165_0.803|GO:0009987_0.783|GO:0016020_0.758|GO:0003674_0.696|GO:0071944_0.690|GO:0005886_0.678|GO:0003824_0.527|GO:0065007_0.508|GO:0008152_0.506
|
IPR000326+116-279_118-277+|IPR036938+17-296+|IPR043216+20-287+
|
SM00014+116-279+
|
PF01569+118-277+PAP2_superfamily
|
— |
PTHR10165+20-287+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
301-435
|
1.000
|
1-300
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.849
|
49685.960
|
9.021
|
19.000
|
22.989
|
15.862
|
42.759
|
57.241
|
14.713
|
8.276
|
48.506
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1328.465
|
570.602
|
539.603
|
360.770
|
424.454
|
556.215
|
334.703
|
675.333
|
199.657
|
4364.161
|
2579.374
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.309
|
-0.799
|
-0.473
|
0.203
|
0.405
|
-0.724
|
— |
-0.875
|
-2.837
|
— | — | — | — |
No JSON data available for plots.