Hg_chrom8_TN10mRNA_14976
Organism: Heterodera glycines Gene Locus: chr8:91244-95015 Feature type: polypeptideProtein Sequence
Length: 398
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.906 | 1.285 | 1.096 | 1.386 | 1.173 | 0.966 | 0.838 | 1.759 | 1.005 | 0.849 | 0.799 | 0.739 | 0.977 | 1.16 | 1.384 | 0.574 | 0.824 | 1.218 | 1.16 | 0.887 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14132
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.394
|
0.277
|
0.116
|
0.555
|
0.144
|
0.112
|
0.066
|
0.076
|
0.063
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011750
|
1.000
|
1.000
|
Hsc_gene_6836.t1
|
Hsc_gene_6836.t1
|
— |
Q4QRK0.2 Methionine aminopeptidase 1 [Danio rerio]
|
KAK5983895.1 Methionine aminopeptidase [Trichostrongylus colubriformis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0070006
|
GO:0008150_0.812|GO:0005575_0.694|GO:0110165_0.690|GO:0008152_0.634|GO:0003674_0.612|GO:0044238_0.608|GO:0005622_0.604|GO:0005737_0.562|GO:0043170_0.560|GO:0019538_0.527
|
IPR000994+136-363+|IPR001714+190-203_212-228_283-295_314-326+|IPR002467+125-372_135-371_289-307+|IPR031615+15-70_18-64+|IPR036005+77-371_79-376+
|
— |
PF00557+136-363+Metallopeptidase_family_M24|PF15801+18-64+zf-MYND-like_zinc_finger,_mRNA-binding
|
— |
PTHR43330+16-372+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;397-398
|
1.000
|
3-396
|
8yp6_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
44683.510
|
6.833
|
3.000
|
28.643
|
11.558
|
46.985
|
53.015
|
15.578
|
13.065
|
53.518
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkgrey
|
2151.680
|
1456.473
|
1459.981
|
2054.949
|
2541.163
|
2468.140
|
2073.759
|
1598.608
|
527.112
|
3898.365
|
2453.543
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.226
|
0.359
|
0.602
|
0.275
|
— |
-0.241
|
-0.734
|
0.519
|
-2.997
|
— | — | — | — |
No JSON data available for plots.