Hg_chrom8_TN10mRNA_14981
Organism: Heterodera glycines Gene Locus: chr8:114042-138547 Feature type: polypeptideProtein Sequence
Length: 1,979
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.899 | 1.093 | 1.029 | 0.209 | 1.634 | 1.062 | 0.547 | 1.137 | 1.179 | 1.113 | 1.661 | 1.843 | 1.221 | 0.777 | 0.938 | 0.642 | 0.795 | 0.835 | 1.166 | 1.011 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14137
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
mitochondrion
|
nucleus
|
RRYKRKL,KKLDKMVESSKKAKD,RRTFDEIVAKCLMKDREK,KRHGYNEKAELREFRRKER,KKMEIQEKKPTEKELRREK,KKPTEKELRREKKGKAKKQ
|
— | — | — | — |
1-25
|
0.979
|
1.000
|
4.000
|
4.000
|
0.276
|
0.530
|
0.041
|
0.468
|
0.371
|
0.292
|
0.173
|
0.033
|
0.311
|
0.225
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011751
|
1.000
|
1.000
|
Hsc_gene_6831.t1
|
— | — | — |
WP_137714761.1 hypothetical protein [Brenneria rubrifaciens];QCR09757.1 hypothetical protein EH207_15250 [Brenneria rubrifaciens]
|
HYW94747
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR033468+1335-1372+|IPR050931+1296-1469+
|
— |
PF17171+1335-1372+Glutathione_S-transferase,_C-terminal_domain
|
— |
PTHR12289+1296-1469+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-77;241-480;1287-1333;1453-1512
|
4.000
|
78-240;481-1286;1334-1452;1513-1979
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.543
|
228555.580
|
7.894
|
24.500
|
33.300
|
11.622
|
51.491
|
48.509
|
17.837
|
15.462
|
42.193
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
51202.139
|
282.042
|
28639.391
|
4227.203
|
655.700
|
96.522
|
200.271
|
301.904
|
274193.416
|
5463.161
|
120633.270
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.437
|
3.767
|
-2.652
|
-2.721
|
-2.749
|
1.062
|
— | — |
5.546
|
-5.835
|
— | — | — |